Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24483 | 5' | -59.3 | NC_005264.1 | + | 58519 | 0.67 | 0.652662 |
Target: 5'- --cGUAAGCGgCGu--CGCGCCUCAAg -3' miRNA: 3'- aaaCGUUCGCgGCcguGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 137934 | 0.67 | 0.642386 |
Target: 5'- cUUUGguGGUGCCGGUaucguuGCGCGaCUUCGc -3' miRNA: 3'- -AAACguUCGCGGCCG------UGCGC-GGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 47711 | 0.67 | 0.673156 |
Target: 5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3' miRNA: 3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 8003 | 0.67 | 0.652662 |
Target: 5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3' miRNA: 3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 8783 | 0.67 | 0.662921 |
Target: 5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3' miRNA: 3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 149730 | 0.67 | 0.642386 |
Target: 5'- cUUGCuguaguGGCGCCGGCGgGCagaggcgaGCCUaCAAu -3' miRNA: 3'- aAACGu-----UCGCGGCCGUgCG--------CGGA-GUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 131569 | 0.67 | 0.632102 |
Target: 5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3' miRNA: 3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 55620 | 0.67 | 0.632102 |
Target: 5'- --gGCuGGCGCCGaaugccaaccGCGCGCGCCg--- -3' miRNA: 3'- aaaCGuUCGCGGC----------CGUGCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 26476 | 0.67 | 0.632102 |
Target: 5'- --cGCuauucGCGCCGGCA-GCGCC-CAGc -3' miRNA: 3'- aaaCGuu---CGCGGCCGUgCGCGGaGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 59108 | 0.67 | 0.673156 |
Target: 5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3' miRNA: 3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 20141 | 0.67 | 0.632102 |
Target: 5'- --gGCAGGCGauGGCGCGcCGCCg--- -3' miRNA: 3'- aaaCGUUCGCggCCGUGC-GCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 106429 | 0.67 | 0.622846 |
Target: 5'- --aGCucgacGGCGCCGcGCucgauaugcgaucguCGCGCCUCAGg -3' miRNA: 3'- aaaCGu----UCGCGGC-CGu--------------GCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 62479 | 0.68 | 0.611542 |
Target: 5'- gUUGC--GCGUCGuGCGCGCGuCCUCu- -3' miRNA: 3'- aAACGuuCGCGGC-CGUGCGC-GGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 8615 | 0.68 | 0.611542 |
Target: 5'- --cGCAAcGCGCacCGGUAgGCGCUUCAc -3' miRNA: 3'- aaaCGUU-CGCG--GCCGUgCGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 126087 | 0.68 | 0.570667 |
Target: 5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 128530 | 0.68 | 0.591044 |
Target: 5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3' miRNA: 3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 128706 | 0.68 | 0.580837 |
Target: 5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3' miRNA: 3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 135150 | 0.68 | 0.567624 |
Target: 5'- --aGCGAGCGUCGGCGaggcagaggccagcCGCGuaCCUCGGu -3' miRNA: 3'- aaaCGUUCGCGGCCGU--------------GCGC--GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 146340 | 0.68 | 0.570667 |
Target: 5'- --cGUcuGCGCCGGC--GUGCCUCGAc -3' miRNA: 3'- aaaCGuuCGCGGCCGugCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 51095 | 0.68 | 0.570667 |
Target: 5'- --cGCGGuCGCCGGUGCugcggucugcucGCGCCUCGAc -3' miRNA: 3'- aaaCGUUcGCGGCCGUG------------CGCGGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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