Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24483 | 5' | -59.3 | NC_005264.1 | + | 47852 | 1.04 | 0.002448 |
Target: 5'- uUUUGCAAGCGCCGGCACGCGCCUCAAg -3' miRNA: 3'- -AAACGUUCGCGGCCGUGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 29274 | 0.76 | 0.218935 |
Target: 5'- aUUGUuggacuguGCGCgGGCGCGUGCCUCGAc -3' miRNA: 3'- aAACGuu------CGCGgCCGUGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 104533 | 0.76 | 0.198245 |
Target: 5'- --cGCGGGCaGCCGGCgaaGCGCGCCaUCAGa -3' miRNA: 3'- aaaCGUUCG-CGGCCG---UGCGCGG-AGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 75101 | 0.74 | 0.265844 |
Target: 5'- --gGCAGGCGCCGGCGCcgagcugggGCGCagUCAAa -3' miRNA: 3'- aaaCGUUCGCGGCCGUG---------CGCGg-AGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 145926 | 0.73 | 0.320566 |
Target: 5'- --gGCGggucAGCGCgGGCAUGgGCCUCAc -3' miRNA: 3'- aaaCGU----UCGCGgCCGUGCgCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 142687 | 0.72 | 0.366873 |
Target: 5'- --cGCGaucuugGGCGCCGGCgGCGCGCCa--- -3' miRNA: 3'- aaaCGU------UCGCGGCCG-UGCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 100923 | 0.72 | 0.358844 |
Target: 5'- --cGCAAGCGgCGGCGCccguGCGCCUa-- -3' miRNA: 3'- aaaCGUUCGCgGCCGUG----CGCGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 37541 | 0.71 | 0.426441 |
Target: 5'- cUUGCAAGCGUCaGGCgaagcgacaGCGCGCCgccgCGGa -3' miRNA: 3'- aAACGUUCGCGG-CCG---------UGCGCGGa---GUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 71775 | 0.71 | 0.408837 |
Target: 5'- -cUGCuGGCGCCGuuGCAgaaGCGCCUCGg -3' miRNA: 3'- aaACGuUCGCGGC--CGUg--CGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 15506 | 0.7 | 0.444487 |
Target: 5'- --aGaCAAGC-CCGGUACGCGCUUCu- -3' miRNA: 3'- aaaC-GUUCGcGGCCGUGCGCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 87743 | 0.7 | 0.481815 |
Target: 5'- --aGCucGGCGCCGGCGCcugccgcaGCGCCgCGAa -3' miRNA: 3'- aaaCGu-UCGCGGCCGUG--------CGCGGaGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 125031 | 0.7 | 0.491385 |
Target: 5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3' miRNA: 3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 136193 | 0.7 | 0.462954 |
Target: 5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3' miRNA: 3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 35793 | 0.7 | 0.453669 |
Target: 5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3' miRNA: 3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 26650 | 0.7 | 0.462954 |
Target: 5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3' miRNA: 3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 154819 | 0.7 | 0.453669 |
Target: 5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3' miRNA: 3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 36750 | 0.69 | 0.540445 |
Target: 5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 144291 | 0.69 | 0.530487 |
Target: 5'- --cGCuccgacuGaCGCCGGCGCGC-CCUCAGg -3' miRNA: 3'- aaaCGuu-----C-GCGGCCGUGCGcGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 155776 | 0.69 | 0.540445 |
Target: 5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 60846 | 0.69 | 0.530487 |
Target: 5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3' miRNA: 3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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