miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 47852 1.04 0.002448
Target:  5'- uUUUGCAAGCGCCGGCACGCGCCUCAAg -3'
miRNA:   3'- -AAACGUUCGCGGCCGUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 104533 0.76 0.198245
Target:  5'- --cGCGGGCaGCCGGCgaaGCGCGCCaUCAGa -3'
miRNA:   3'- aaaCGUUCG-CGGCCG---UGCGCGG-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 29274 0.76 0.218935
Target:  5'- aUUGUuggacuguGCGCgGGCGCGUGCCUCGAc -3'
miRNA:   3'- aAACGuu------CGCGgCCGUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 75101 0.74 0.265844
Target:  5'- --gGCAGGCGCCGGCGCcgagcugggGCGCagUCAAa -3'
miRNA:   3'- aaaCGUUCGCGGCCGUG---------CGCGg-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 145926 0.73 0.320566
Target:  5'- --gGCGggucAGCGCgGGCAUGgGCCUCAc -3'
miRNA:   3'- aaaCGU----UCGCGgCCGUGCgCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 100923 0.72 0.358844
Target:  5'- --cGCAAGCGgCGGCGCccguGCGCCUa-- -3'
miRNA:   3'- aaaCGUUCGCgGCCGUG----CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 142687 0.72 0.366873
Target:  5'- --cGCGaucuugGGCGCCGGCgGCGCGCCa--- -3'
miRNA:   3'- aaaCGU------UCGCGGCCG-UGCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 71775 0.71 0.408837
Target:  5'- -cUGCuGGCGCCGuuGCAgaaGCGCCUCGg -3'
miRNA:   3'- aaACGuUCGCGGC--CGUg--CGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 37541 0.71 0.426441
Target:  5'- cUUGCAAGCGUCaGGCgaagcgacaGCGCGCCgccgCGGa -3'
miRNA:   3'- aAACGUUCGCGG-CCG---------UGCGCGGa---GUU- -5'
24483 5' -59.3 NC_005264.1 + 15506 0.7 0.444487
Target:  5'- --aGaCAAGC-CCGGUACGCGCUUCu- -3'
miRNA:   3'- aaaC-GUUCGcGGCCGUGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 154819 0.7 0.453669
Target:  5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3'
miRNA:   3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 35793 0.7 0.453669
Target:  5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3'
miRNA:   3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 26650 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 136193 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 87743 0.7 0.481815
Target:  5'- --aGCucGGCGCCGGCGCcugccgcaGCGCCgCGAa -3'
miRNA:   3'- aaaCGu-UCGCGGCCGUG--------CGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 125031 0.7 0.491385
Target:  5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3'
miRNA:   3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 144291 0.69 0.530487
Target:  5'- --cGCuccgacuGaCGCCGGCGCGC-CCUCAGg -3'
miRNA:   3'- aaaCGuu-----C-GCGGCCGUGCGcGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 60846 0.69 0.530487
Target:  5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3'
miRNA:   3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5'
24483 5' -59.3 NC_005264.1 + 69348 0.69 0.540445
Target:  5'- ---aCGAcGCGCCGGCcgccaGCaGCGCCUCAGa -3'
miRNA:   3'- aaacGUU-CGCGGCCG-----UG-CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 36750 0.69 0.540445
Target:  5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.