miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 131569 0.67 0.632102
Target:  5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3'
miRNA:   3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 20141 0.67 0.632102
Target:  5'- --gGCAGGCGauGGCGCGcCGCCg--- -3'
miRNA:   3'- aaaCGUUCGCggCCGUGC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 82353 0.67 0.642386
Target:  5'- --cGCAcguGUGCCaGGCAgGCGCgUCGAu -3'
miRNA:   3'- aaaCGUu--CGCGG-CCGUgCGCGgAGUU- -5'
24483 5' -59.3 NC_005264.1 + 149730 0.67 0.642386
Target:  5'- cUUGCuguaguGGCGCCGGCGgGCagaggcgaGCCUaCAAu -3'
miRNA:   3'- aAACGu-----UCGCGGCCGUgCG--------CGGA-GUU- -5'
24483 5' -59.3 NC_005264.1 + 137934 0.67 0.642386
Target:  5'- cUUUGguGGUGCCGGUaucguuGCGCGaCUUCGc -3'
miRNA:   3'- -AAACguUCGCGGCCG------UGCGC-GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 58519 0.67 0.652662
Target:  5'- --cGUAAGCGgCGu--CGCGCCUCAAg -3'
miRNA:   3'- aaaCGUUCGCgGCcguGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 90323 0.67 0.652662
Target:  5'- -aUGCaAAGCGCC---ACGCGCCUCu- -3'
miRNA:   3'- aaACG-UUCGCGGccgUGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 127030 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 8003 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 8783 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 20252 0.67 0.662921
Target:  5'- --gGCAGGgGUugCGGCGCG-GCCUCGc -3'
miRNA:   3'- aaaCGUUCgCG--GCCGUGCgCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 127809 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 18415 0.67 0.673156
Target:  5'- --gGCcGGCGCaGGCGCGC-CCUCu- -3'
miRNA:   3'- aaaCGuUCGCGgCCGUGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 59108 0.67 0.673156
Target:  5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3'
miRNA:   3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 129594 0.67 0.673156
Target:  5'- -cUGCAGGCGCugCGGCGCgGCGgcgaagcuUCUCGAg -3'
miRNA:   3'- aaACGUUCGCG--GCCGUG-CGC--------GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 47711 0.67 0.673156
Target:  5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3'
miRNA:   3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5'
24483 5' -59.3 NC_005264.1 + 42111 0.66 0.693514
Target:  5'- --cGCAGuCGCCGGCAC-CGuCCUCc- -3'
miRNA:   3'- aaaCGUUcGCGGCCGUGcGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 59711 0.66 0.693514
Target:  5'- --cGCGccGCGCCGGCGgcuacCGCGCCg--- -3'
miRNA:   3'- aaaCGUu-CGCGGCCGU-----GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 103012 0.66 0.70362
Target:  5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3'
miRNA:   3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 66545 0.66 0.710658
Target:  5'- gUUGCGGGCGUCGGCGauuuccacaagcucCGcCGCCa--- -3'
miRNA:   3'- aAACGUUCGCGGCCGU--------------GC-GCGGaguu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.