miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 8003 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 58519 0.67 0.652662
Target:  5'- --cGUAAGCGgCGu--CGCGCCUCAAg -3'
miRNA:   3'- aaaCGUUCGCgGCcguGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 90323 0.67 0.652662
Target:  5'- -aUGCaAAGCGCC---ACGCGCCUCu- -3'
miRNA:   3'- aaACG-UUCGCGGccgUGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 127030 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 82353 0.67 0.642386
Target:  5'- --cGCAcguGUGCCaGGCAgGCGCgUCGAu -3'
miRNA:   3'- aaaCGUu--CGCGG-CCGUgCGCGgAGUU- -5'
24483 5' -59.3 NC_005264.1 + 149730 0.67 0.642386
Target:  5'- cUUGCuguaguGGCGCCGGCGgGCagaggcgaGCCUaCAAu -3'
miRNA:   3'- aAACGu-----UCGCGGCCGUgCG--------CGGA-GUU- -5'
24483 5' -59.3 NC_005264.1 + 137934 0.67 0.642386
Target:  5'- cUUUGguGGUGCCGGUaucguuGCGCGaCUUCGc -3'
miRNA:   3'- -AAACguUCGCGGCCG------UGCGC-GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 26476 0.67 0.632102
Target:  5'- --cGCuauucGCGCCGGCA-GCGCC-CAGc -3'
miRNA:   3'- aaaCGuu---CGCGGCCGUgCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 55620 0.67 0.632102
Target:  5'- --gGCuGGCGCCGaaugccaaccGCGCGCGCCg--- -3'
miRNA:   3'- aaaCGuUCGCGGC----------CGUGCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 131569 0.67 0.632102
Target:  5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3'
miRNA:   3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 20141 0.67 0.632102
Target:  5'- --gGCAGGCGauGGCGCGcCGCCg--- -3'
miRNA:   3'- aaaCGUUCGCggCCGUGC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 106429 0.67 0.622846
Target:  5'- --aGCucgacGGCGCCGcGCucgauaugcgaucguCGCGCCUCAGg -3'
miRNA:   3'- aaaCGu----UCGCGGC-CGu--------------GCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 8615 0.68 0.611542
Target:  5'- --cGCAAcGCGCacCGGUAgGCGCUUCAc -3'
miRNA:   3'- aaaCGUU-CGCG--GCCGUgCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 62479 0.68 0.611542
Target:  5'- gUUGC--GCGUCGuGCGCGCGuCCUCu- -3'
miRNA:   3'- aAACGuuCGCGGC-CGUGCGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 1210 0.68 0.601281
Target:  5'- gUUGUAAuGgGCCguGGgGCGUGCCUCAGg -3'
miRNA:   3'- aAACGUU-CgCGG--CCgUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 26376 0.68 0.600257
Target:  5'- -cUGCGcGGCGCCGucucugaGCGCG-GCCUCAGc -3'
miRNA:   3'- aaACGU-UCGCGGC-------CGUGCgCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 133538 0.68 0.595136
Target:  5'- -aUGCAuGGCGCaaagaaaacgucgaGGCACGCGCC-CGc -3'
miRNA:   3'- aaACGU-UCGCGg-------------CCGUGCGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 9503 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 128530 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 36527 0.68 0.591044
Target:  5'- --gGCGGGCGCaggagccauCGGcCGCGCGCC-CGAa -3'
miRNA:   3'- aaaCGUUCGCG---------GCC-GUGCGCGGaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.