miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 128706 0.68 0.580837
Target:  5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3'
miRNA:   3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 9679 0.68 0.580837
Target:  5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3'
miRNA:   3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 146340 0.68 0.570667
Target:  5'- --cGUcuGCGCCGGC--GUGCCUCGAc -3'
miRNA:   3'- aaaCGuuCGCGGCCGugCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 126087 0.68 0.570667
Target:  5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 51095 0.68 0.570667
Target:  5'- --cGCGGuCGCCGGUGCugcggucugcucGCGCCUCGAc -3'
miRNA:   3'- aaaCGUUcGCGGCCGUG------------CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 7060 0.68 0.570667
Target:  5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 135150 0.68 0.567624
Target:  5'- --aGCGAGCGUCGGCGaggcagaggccagcCGCGuaCCUCGGu -3'
miRNA:   3'- aaaCGUUCGCGGCCGU--------------GCGC--GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 96230 0.68 0.560541
Target:  5'- --cGCGacGGCGCCGGCaACGCGgCgCAGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCG-UGCGCgGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 155776 0.69 0.540445
Target:  5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 69348 0.69 0.540445
Target:  5'- ---aCGAcGCGCCGGCcgccaGCaGCGCCUCAGa -3'
miRNA:   3'- aaacGUU-CGCGGCCG-----UG-CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 36750 0.69 0.540445
Target:  5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 60846 0.69 0.530487
Target:  5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3'
miRNA:   3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5'
24483 5' -59.3 NC_005264.1 + 144291 0.69 0.530487
Target:  5'- --cGCuccgacuGaCGCCGGCGCGC-CCUCAGg -3'
miRNA:   3'- aaaCGuu-----C-GCGGCCGUGCGcGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 125031 0.7 0.491385
Target:  5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3'
miRNA:   3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 87743 0.7 0.481815
Target:  5'- --aGCucGGCGCCGGCGCcugccgcaGCGCCgCGAa -3'
miRNA:   3'- aaaCGu-UCGCGGCCGUG--------CGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 136193 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 26650 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 35793 0.7 0.453669
Target:  5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3'
miRNA:   3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 154819 0.7 0.453669
Target:  5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3'
miRNA:   3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 15506 0.7 0.444487
Target:  5'- --aGaCAAGC-CCGGUACGCGCUUCu- -3'
miRNA:   3'- aaaC-GUUCGcGGCCGUGCGCGGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.