miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 1210 0.68 0.601281
Target:  5'- gUUGUAAuGgGCCguGGgGCGUGCCUCAGg -3'
miRNA:   3'- aAACGUU-CgCGG--CCgUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 7060 0.68 0.570667
Target:  5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 8003 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 8324 0.66 0.713665
Target:  5'- cUUGUuuGCGCgCGGCAUguGCGCCccgCAGa -3'
miRNA:   3'- aAACGuuCGCG-GCCGUG--CGCGGa--GUU- -5'
24483 5' -59.3 NC_005264.1 + 8615 0.68 0.611542
Target:  5'- --cGCAAcGCGCacCGGUAgGCGCUUCAc -3'
miRNA:   3'- aaaCGUU-CGCG--GCCGUgCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 8783 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 9503 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 9679 0.68 0.580837
Target:  5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3'
miRNA:   3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 15506 0.7 0.444487
Target:  5'- --aGaCAAGC-CCGGUACGCGCUUCu- -3'
miRNA:   3'- aaaC-GUUCGcGGCCGUGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 18415 0.67 0.673156
Target:  5'- --gGCcGGCGCaGGCGCGC-CCUCu- -3'
miRNA:   3'- aaaCGuUCGCGgCCGUGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 20141 0.67 0.632102
Target:  5'- --gGCAGGCGauGGCGCGcCGCCg--- -3'
miRNA:   3'- aaaCGUUCGCggCCGUGC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 20252 0.67 0.662921
Target:  5'- --gGCAGGgGUugCGGCGCG-GCCUCGc -3'
miRNA:   3'- aaaCGUUCgCG--GCCGUGCgCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 21982 0.66 0.733535
Target:  5'- --gGUAGGgcCGCCGGCuguCGuCGCCUCu- -3'
miRNA:   3'- aaaCGUUC--GCGGCCGu--GC-GCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 26376 0.68 0.600257
Target:  5'- -cUGCGcGGCGCCGucucugaGCGCG-GCCUCAGc -3'
miRNA:   3'- aaACGU-UCGCGGC-------CGUGCgCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 26476 0.67 0.632102
Target:  5'- --cGCuauucGCGCCGGCA-GCGCC-CAGc -3'
miRNA:   3'- aaaCGuu---CGCGGCCGUgCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 26650 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 29274 0.76 0.218935
Target:  5'- aUUGUuggacuguGCGCgGGCGCGUGCCUCGAc -3'
miRNA:   3'- aAACGuu------CGCGgCCGUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 30360 0.66 0.72364
Target:  5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3'
miRNA:   3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 35793 0.7 0.453669
Target:  5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3'
miRNA:   3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 36527 0.68 0.591044
Target:  5'- --gGCGGGCGCaggagccauCGGcCGCGCGCC-CGAa -3'
miRNA:   3'- aaaCGUUCGCG---------GCC-GUGCGCGGaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.