miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 36750 0.69 0.540445
Target:  5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 37541 0.71 0.426441
Target:  5'- cUUGCAAGCGUCaGGCgaagcgacaGCGCGCCgccgCGGa -3'
miRNA:   3'- aAACGUUCGCGG-CCG---------UGCGCGGa---GUU- -5'
24483 5' -59.3 NC_005264.1 + 42111 0.66 0.693514
Target:  5'- --cGCAGuCGCCGGCAC-CGuCCUCc- -3'
miRNA:   3'- aaaCGUUcGCGGCCGUGcGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 47711 0.67 0.673156
Target:  5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3'
miRNA:   3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5'
24483 5' -59.3 NC_005264.1 + 47852 1.04 0.002448
Target:  5'- uUUUGCAAGCGCCGGCACGCGCCUCAAg -3'
miRNA:   3'- -AAACGUUCGCGGCCGUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 51095 0.68 0.570667
Target:  5'- --cGCGGuCGCCGGUGCugcggucugcucGCGCCUCGAc -3'
miRNA:   3'- aaaCGUUcGCGGCCGUG------------CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 55620 0.67 0.632102
Target:  5'- --gGCuGGCGCCGaaugccaaccGCGCGCGCCg--- -3'
miRNA:   3'- aaaCGuUCGCGGC----------CGUGCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 58519 0.67 0.652662
Target:  5'- --cGUAAGCGgCGu--CGCGCCUCAAg -3'
miRNA:   3'- aaaCGUUCGCgGCcguGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 59108 0.67 0.673156
Target:  5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3'
miRNA:   3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 59711 0.66 0.693514
Target:  5'- --cGCGccGCGCCGGCGgcuacCGCGCCg--- -3'
miRNA:   3'- aaaCGUu-CGCGGCCGU-----GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 60846 0.69 0.530487
Target:  5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3'
miRNA:   3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5'
24483 5' -59.3 NC_005264.1 + 62479 0.68 0.611542
Target:  5'- gUUGC--GCGUCGuGCGCGCGuCCUCu- -3'
miRNA:   3'- aAACGuuCGCGGC-CGUGCGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 66545 0.66 0.710658
Target:  5'- gUUGCGGGCGUCGGCGauuuccacaagcucCGcCGCCa--- -3'
miRNA:   3'- aAACGUUCGCGGCCGU--------------GC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 69348 0.69 0.540445
Target:  5'- ---aCGAcGCGCCGGCcgccaGCaGCGCCUCAGa -3'
miRNA:   3'- aaacGUU-CGCGGCCG-----UG-CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 71775 0.71 0.408837
Target:  5'- -cUGCuGGCGCCGuuGCAgaaGCGCCUCGg -3'
miRNA:   3'- aaACGuUCGCGGC--CGUg--CGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 74238 0.66 0.713665
Target:  5'- --cGUAGcGCGCUGGC-CGCGCUcCAGa -3'
miRNA:   3'- aaaCGUU-CGCGGCCGuGCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 75101 0.74 0.265844
Target:  5'- --gGCAGGCGCCGGCGCcgagcugggGCGCagUCAAa -3'
miRNA:   3'- aaaCGUUCGCGGCCGUG---------CGCGg-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 82353 0.67 0.642386
Target:  5'- --cGCAcguGUGCCaGGCAgGCGCgUCGAu -3'
miRNA:   3'- aaaCGUu--CGCGG-CCGUgCGCGgAGUU- -5'
24483 5' -59.3 NC_005264.1 + 87743 0.7 0.481815
Target:  5'- --aGCucGGCGCCGGCGCcugccgcaGCGCCgCGAa -3'
miRNA:   3'- aaaCGu-UCGCGGCCGUG--------CGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 90323 0.67 0.652662
Target:  5'- -aUGCaAAGCGCC---ACGCGCCUCu- -3'
miRNA:   3'- aaACG-UUCGCGGccgUGCGCGGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.