miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 95456 0.66 0.733535
Target:  5'- --cGCuaccGCGCCGGCGgGCGCagCGAg -3'
miRNA:   3'- aaaCGuu--CGCGGCCGUgCGCGgaGUU- -5'
24483 5' -59.3 NC_005264.1 + 96230 0.68 0.560541
Target:  5'- --cGCGacGGCGCCGGCaACGCGgCgCAGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCG-UGCGCgGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 100923 0.72 0.358844
Target:  5'- --cGCAAGCGgCGGCGCccguGCGCCUa-- -3'
miRNA:   3'- aaaCGUUCGCgGCCGUG----CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 103012 0.66 0.70362
Target:  5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3'
miRNA:   3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 104533 0.76 0.198245
Target:  5'- --cGCGGGCaGCCGGCgaaGCGCGCCaUCAGa -3'
miRNA:   3'- aaaCGUUCG-CGGCCG---UGCGCGG-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 104816 0.66 0.733535
Target:  5'- --aGCGGGCGCC-GCACGacgGCCUg-- -3'
miRNA:   3'- aaaCGUUCGCGGcCGUGCg--CGGAguu -5'
24483 5' -59.3 NC_005264.1 + 106429 0.67 0.622846
Target:  5'- --aGCucgacGGCGCCGcGCucgauaugcgaucguCGCGCCUCAGg -3'
miRNA:   3'- aaaCGu----UCGCGGC-CGu--------------GCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 121862 0.66 0.733535
Target:  5'- --aGCGAGgGUCGGCGCaaGCUUCc- -3'
miRNA:   3'- aaaCGUUCgCGGCCGUGcgCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 125031 0.7 0.491385
Target:  5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3'
miRNA:   3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 126087 0.68 0.570667
Target:  5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 127030 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 127809 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 128530 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 128706 0.68 0.580837
Target:  5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3'
miRNA:   3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 129594 0.67 0.673156
Target:  5'- -cUGCAGGCGCugCGGCGCgGCGgcgaagcuUCUCGAg -3'
miRNA:   3'- aaACGUUCGCG--GCCGUG-CGC--------GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 131569 0.67 0.632102
Target:  5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3'
miRNA:   3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 133538 0.68 0.595136
Target:  5'- -aUGCAuGGCGCaaagaaaacgucgaGGCACGCGCC-CGc -3'
miRNA:   3'- aaACGU-UCGCGg-------------CCGUGCGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 135150 0.68 0.567624
Target:  5'- --aGCGAGCGUCGGCGaggcagaggccagcCGCGuaCCUCGGu -3'
miRNA:   3'- aaaCGUUCGCGGCCGU--------------GCGC--GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 136193 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 137934 0.67 0.642386
Target:  5'- cUUUGguGGUGCCGGUaucguuGCGCGaCUUCGc -3'
miRNA:   3'- -AAACguUCGCGGCCG------UGCGC-GGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.