Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24483 | 5' | -59.3 | NC_005264.1 | + | 155776 | 0.69 | 0.540445 |
Target: 5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 154819 | 0.7 | 0.453669 |
Target: 5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3' miRNA: 3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 149730 | 0.67 | 0.642386 |
Target: 5'- cUUGCuguaguGGCGCCGGCGgGCagaggcgaGCCUaCAAu -3' miRNA: 3'- aAACGu-----UCGCGGCCGUgCG--------CGGA-GUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 149387 | 0.66 | 0.72364 |
Target: 5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3' miRNA: 3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 146770 | 0.66 | 0.713665 |
Target: 5'- --aGCAAGCGCCGcGCG-GCGguUCUCGGu -3' miRNA: 3'- aaaCGUUCGCGGC-CGUgCGC--GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 146340 | 0.68 | 0.570667 |
Target: 5'- --cGUcuGCGCCGGC--GUGCCUCGAc -3' miRNA: 3'- aaaCGuuCGCGGCCGugCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 145926 | 0.73 | 0.320566 |
Target: 5'- --gGCGggucAGCGCgGGCAUGgGCCUCAc -3' miRNA: 3'- aaaCGU----UCGCGgCCGUGCgCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 144291 | 0.69 | 0.530487 |
Target: 5'- --cGCuccgacuGaCGCCGGCGCGC-CCUCAGg -3' miRNA: 3'- aaaCGuu-----C-GCGGCCGUGCGcGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 142687 | 0.72 | 0.366873 |
Target: 5'- --cGCGaucuugGGCGCCGGCgGCGCGCCa--- -3' miRNA: 3'- aaaCGU------UCGCGGCCG-UGCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 137934 | 0.67 | 0.642386 |
Target: 5'- cUUUGguGGUGCCGGUaucguuGCGCGaCUUCGc -3' miRNA: 3'- -AAACguUCGCGGCCG------UGCGC-GGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 136193 | 0.7 | 0.462954 |
Target: 5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3' miRNA: 3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 135150 | 0.68 | 0.567624 |
Target: 5'- --aGCGAGCGUCGGCGaggcagaggccagcCGCGuaCCUCGGu -3' miRNA: 3'- aaaCGUUCGCGGCCGU--------------GCGC--GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 133538 | 0.68 | 0.595136 |
Target: 5'- -aUGCAuGGCGCaaagaaaacgucgaGGCACGCGCC-CGc -3' miRNA: 3'- aaACGU-UCGCGg-------------CCGUGCGCGGaGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 131569 | 0.67 | 0.632102 |
Target: 5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3' miRNA: 3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 129594 | 0.67 | 0.673156 |
Target: 5'- -cUGCAGGCGCugCGGCGCgGCGgcgaagcuUCUCGAg -3' miRNA: 3'- aaACGUUCGCG--GCCGUG-CGC--------GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 128706 | 0.68 | 0.580837 |
Target: 5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3' miRNA: 3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 128530 | 0.68 | 0.591044 |
Target: 5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3' miRNA: 3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 127809 | 0.67 | 0.662921 |
Target: 5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3' miRNA: 3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 127030 | 0.67 | 0.652662 |
Target: 5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3' miRNA: 3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 126087 | 0.68 | 0.570667 |
Target: 5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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