miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 125031 0.7 0.491385
Target:  5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3'
miRNA:   3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 121862 0.66 0.733535
Target:  5'- --aGCGAGgGUCGGCGCaaGCUUCc- -3'
miRNA:   3'- aaaCGUUCgCGGCCGUGcgCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 106429 0.67 0.622846
Target:  5'- --aGCucgacGGCGCCGcGCucgauaugcgaucguCGCGCCUCAGg -3'
miRNA:   3'- aaaCGu----UCGCGGC-CGu--------------GCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 104816 0.66 0.733535
Target:  5'- --aGCGGGCGCC-GCACGacgGCCUg-- -3'
miRNA:   3'- aaaCGUUCGCGGcCGUGCg--CGGAguu -5'
24483 5' -59.3 NC_005264.1 + 104533 0.76 0.198245
Target:  5'- --cGCGGGCaGCCGGCgaaGCGCGCCaUCAGa -3'
miRNA:   3'- aaaCGUUCG-CGGCCG---UGCGCGG-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 103012 0.66 0.70362
Target:  5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3'
miRNA:   3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 100923 0.72 0.358844
Target:  5'- --cGCAAGCGgCGGCGCccguGCGCCUa-- -3'
miRNA:   3'- aaaCGUUCGCgGCCGUG----CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 96230 0.68 0.560541
Target:  5'- --cGCGacGGCGCCGGCaACGCGgCgCAGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCG-UGCGCgGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 95456 0.66 0.733535
Target:  5'- --cGCuaccGCGCCGGCGgGCGCagCGAg -3'
miRNA:   3'- aaaCGuu--CGCGGCCGUgCGCGgaGUU- -5'
24483 5' -59.3 NC_005264.1 + 90323 0.67 0.652662
Target:  5'- -aUGCaAAGCGCC---ACGCGCCUCu- -3'
miRNA:   3'- aaACG-UUCGCGGccgUGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 87743 0.7 0.481815
Target:  5'- --aGCucGGCGCCGGCGCcugccgcaGCGCCgCGAa -3'
miRNA:   3'- aaaCGu-UCGCGGCCGUG--------CGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 82353 0.67 0.642386
Target:  5'- --cGCAcguGUGCCaGGCAgGCGCgUCGAu -3'
miRNA:   3'- aaaCGUu--CGCGG-CCGUgCGCGgAGUU- -5'
24483 5' -59.3 NC_005264.1 + 75101 0.74 0.265844
Target:  5'- --gGCAGGCGCCGGCGCcgagcugggGCGCagUCAAa -3'
miRNA:   3'- aaaCGUUCGCGGCCGUG---------CGCGg-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 74238 0.66 0.713665
Target:  5'- --cGUAGcGCGCUGGC-CGCGCUcCAGa -3'
miRNA:   3'- aaaCGUU-CGCGGCCGuGCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 71775 0.71 0.408837
Target:  5'- -cUGCuGGCGCCGuuGCAgaaGCGCCUCGg -3'
miRNA:   3'- aaACGuUCGCGGC--CGUg--CGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 69348 0.69 0.540445
Target:  5'- ---aCGAcGCGCCGGCcgccaGCaGCGCCUCAGa -3'
miRNA:   3'- aaacGUU-CGCGGCCG-----UG-CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 66545 0.66 0.710658
Target:  5'- gUUGCGGGCGUCGGCGauuuccacaagcucCGcCGCCa--- -3'
miRNA:   3'- aAACGUUCGCGGCCGU--------------GC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 62479 0.68 0.611542
Target:  5'- gUUGC--GCGUCGuGCGCGCGuCCUCu- -3'
miRNA:   3'- aAACGuuCGCGGC-CGUGCGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 60846 0.69 0.530487
Target:  5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3'
miRNA:   3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5'
24483 5' -59.3 NC_005264.1 + 59711 0.66 0.693514
Target:  5'- --cGCGccGCGCCGGCGgcuacCGCGCCg--- -3'
miRNA:   3'- aaaCGUu-CGCGGCCGU-----GCGCGGaguu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.