miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 137934 0.67 0.642386
Target:  5'- cUUUGguGGUGCCGGUaucguuGCGCGaCUUCGc -3'
miRNA:   3'- -AAACguUCGCGGCCG------UGCGC-GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 146340 0.68 0.570667
Target:  5'- --cGUcuGCGCCGGC--GUGCCUCGAc -3'
miRNA:   3'- aaaCGuuCGCGGCCGugCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 128706 0.68 0.580837
Target:  5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3'
miRNA:   3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 128530 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 36527 0.68 0.591044
Target:  5'- --gGCGGGCGCaggagccauCGGcCGCGCGCC-CGAa -3'
miRNA:   3'- aaaCGUUCGCG---------GCC-GUGCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 133538 0.68 0.595136
Target:  5'- -aUGCAuGGCGCaaagaaaacgucgaGGCACGCGCC-CGc -3'
miRNA:   3'- aaACGU-UCGCGg-------------CCGUGCGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 1210 0.68 0.601281
Target:  5'- gUUGUAAuGgGCCguGGgGCGUGCCUCAGg -3'
miRNA:   3'- aAACGUU-CgCGG--CCgUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 8615 0.68 0.611542
Target:  5'- --cGCAAcGCGCacCGGUAgGCGCUUCAc -3'
miRNA:   3'- aaaCGUU-CGCG--GCCGUgCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 62479 0.68 0.611542
Target:  5'- gUUGC--GCGUCGuGCGCGCGuCCUCu- -3'
miRNA:   3'- aAACGuuCGCGGC-CGUGCGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 126087 0.68 0.570667
Target:  5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 51095 0.68 0.570667
Target:  5'- --cGCGGuCGCCGGUGCugcggucugcucGCGCCUCGAc -3'
miRNA:   3'- aaaCGUUcGCGGCCGUG------------CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 135150 0.68 0.567624
Target:  5'- --aGCGAGCGUCGGCGaggcagaggccagcCGCGuaCCUCGGu -3'
miRNA:   3'- aaaCGUUCGCGGCCGU--------------GCGC--GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 145926 0.73 0.320566
Target:  5'- --gGCGggucAGCGCgGGCAUGgGCCUCAc -3'
miRNA:   3'- aaaCGU----UCGCGgCCGUGCgCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 100923 0.72 0.358844
Target:  5'- --cGCAAGCGgCGGCGCccguGCGCCUa-- -3'
miRNA:   3'- aaaCGUUCGCgGCCGUG----CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 142687 0.72 0.366873
Target:  5'- --cGCGaucuugGGCGCCGGCgGCGCGCCa--- -3'
miRNA:   3'- aaaCGU------UCGCGGCCG-UGCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 37541 0.71 0.426441
Target:  5'- cUUGCAAGCGUCaGGCgaagcgacaGCGCGCCgccgCGGa -3'
miRNA:   3'- aAACGUUCGCGG-CCG---------UGCGCGGa---GUU- -5'
24483 5' -59.3 NC_005264.1 + 154819 0.7 0.453669
Target:  5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3'
miRNA:   3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 26650 0.7 0.462954
Target:  5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3'
miRNA:   3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 60846 0.69 0.530487
Target:  5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3'
miRNA:   3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5'
24483 5' -59.3 NC_005264.1 + 155776 0.69 0.540445
Target:  5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.