Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24483 | 5' | -59.3 | NC_005264.1 | + | 100923 | 0.72 | 0.358844 |
Target: 5'- --cGCAAGCGgCGGCGCccguGCGCCUa-- -3' miRNA: 3'- aaaCGUUCGCgGCCGUG----CGCGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 142687 | 0.72 | 0.366873 |
Target: 5'- --cGCGaucuugGGCGCCGGCgGCGCGCCa--- -3' miRNA: 3'- aaaCGU------UCGCGGCCG-UGCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 37541 | 0.71 | 0.426441 |
Target: 5'- cUUGCAAGCGUCaGGCgaagcgacaGCGCGCCgccgCGGa -3' miRNA: 3'- aAACGUUCGCGG-CCG---------UGCGCGGa---GUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 154819 | 0.7 | 0.453669 |
Target: 5'- --cGguGGCGCCgucguGGCGgGCGCCUCu- -3' miRNA: 3'- aaaCguUCGCGG-----CCGUgCGCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 26650 | 0.7 | 0.462954 |
Target: 5'- --aGCGcGGCGCCGGCGcCGCGCUa--- -3' miRNA: 3'- aaaCGU-UCGCGGCCGU-GCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 60846 | 0.69 | 0.530487 |
Target: 5'- --gGCGucGGCGUCGGCGCGUGCgCggCAAa -3' miRNA: 3'- aaaCGU--UCGCGGCCGUGCGCG-Ga-GUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 155776 | 0.69 | 0.540445 |
Target: 5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 128530 | 0.68 | 0.591044 |
Target: 5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3' miRNA: 3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 128706 | 0.68 | 0.580837 |
Target: 5'- cUUGgGGGagGCgGGCuCGCGCCUCGAc -3' miRNA: 3'- aAACgUUCg-CGgCCGuGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 146340 | 0.68 | 0.570667 |
Target: 5'- --cGUcuGCGCCGGC--GUGCCUCGAc -3' miRNA: 3'- aaaCGuuCGCGGCCGugCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 126087 | 0.68 | 0.570667 |
Target: 5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3' miRNA: 3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 51095 | 0.68 | 0.570667 |
Target: 5'- --cGCGGuCGCCGGUGCugcggucugcucGCGCCUCGAc -3' miRNA: 3'- aaaCGUUcGCGGCCGUG------------CGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 135150 | 0.68 | 0.567624 |
Target: 5'- --aGCGAGCGUCGGCGaggcagaggccagcCGCGuaCCUCGGu -3' miRNA: 3'- aaaCGUUCGCGGCCGU--------------GCGC--GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 103012 | 0.66 | 0.70362 |
Target: 5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3' miRNA: 3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 74238 | 0.66 | 0.713665 |
Target: 5'- --cGUAGcGCGCUGGC-CGCGCUcCAGa -3' miRNA: 3'- aaaCGUU-CGCGGCCGuGCGCGGaGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 30360 | 0.66 | 0.72364 |
Target: 5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3' miRNA: 3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 104816 | 0.66 | 0.733535 |
Target: 5'- --aGCGGGCGCC-GCACGacgGCCUg-- -3' miRNA: 3'- aaaCGUUCGCGGcCGUGCg--CGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 121862 | 0.66 | 0.733535 |
Target: 5'- --aGCGAGgGUCGGCGCaaGCUUCc- -3' miRNA: 3'- aaaCGUUCgCGGCCGUGcgCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 21982 | 0.66 | 0.733535 |
Target: 5'- --gGUAGGgcCGCCGGCuguCGuCGCCUCu- -3' miRNA: 3'- aaaCGUUC--GCGGCCGu--GC-GCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 47852 | 1.04 | 0.002448 |
Target: 5'- uUUUGCAAGCGCCGGCACGCGCCUCAAg -3' miRNA: 3'- -AAACGUUCGCGGCCGUGCGCGGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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