miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 7060 0.68 0.570667
Target:  5'- --gGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 96230 0.68 0.560541
Target:  5'- --cGCGacGGCGCCGGCaACGCGgCgCAGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCG-UGCGCgGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 69348 0.69 0.540445
Target:  5'- ---aCGAcGCGCCGGCcgccaGCaGCGCCUCAGa -3'
miRNA:   3'- aaacGUU-CGCGGCCG-----UG-CGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 36750 0.69 0.540445
Target:  5'- --cGCGacGGCGCCGGC-CGgCGCCgUCGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCGuGC-GCGG-AGUu -5'
24483 5' -59.3 NC_005264.1 + 144291 0.69 0.530487
Target:  5'- --cGCuccgacuGaCGCCGGCGCGC-CCUCAGg -3'
miRNA:   3'- aaaCGuu-----C-GCGGCCGUGCGcGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 125031 0.7 0.491385
Target:  5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3'
miRNA:   3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 131569 0.67 0.632102
Target:  5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3'
miRNA:   3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5'
24483 5' -59.3 NC_005264.1 + 82353 0.67 0.642386
Target:  5'- --cGCAcguGUGCCaGGCAgGCGCgUCGAu -3'
miRNA:   3'- aaaCGUu--CGCGG-CCGUgCGCGgAGUU- -5'
24483 5' -59.3 NC_005264.1 + 21982 0.66 0.733535
Target:  5'- --gGUAGGgcCGCCGGCuguCGuCGCCUCu- -3'
miRNA:   3'- aaaCGUUC--GCGGCCGu--GC-GCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 121862 0.66 0.733535
Target:  5'- --aGCGAGgGUCGGCGCaaGCUUCc- -3'
miRNA:   3'- aaaCGUUCgCGGCCGUGcgCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 104816 0.66 0.733535
Target:  5'- --aGCGGGCGCC-GCACGacgGCCUg-- -3'
miRNA:   3'- aaaCGUUCGCGGcCGUGCg--CGGAguu -5'
24483 5' -59.3 NC_005264.1 + 30360 0.66 0.72364
Target:  5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3'
miRNA:   3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 74238 0.66 0.713665
Target:  5'- --cGUAGcGCGCUGGC-CGCGCUcCAGa -3'
miRNA:   3'- aaaCGUU-CGCGGCCGuGCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 103012 0.66 0.70362
Target:  5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3'
miRNA:   3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 129594 0.67 0.673156
Target:  5'- -cUGCAGGCGCugCGGCGCgGCGgcgaagcuUCUCGAg -3'
miRNA:   3'- aaACGUUCGCG--GCCGUG-CGC--------GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 59108 0.67 0.673156
Target:  5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3'
miRNA:   3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 47711 0.67 0.673156
Target:  5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3'
miRNA:   3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5'
24483 5' -59.3 NC_005264.1 + 8783 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 8003 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 149730 0.67 0.642386
Target:  5'- cUUGCuguaguGGCGCCGGCGgGCagaggcgaGCCUaCAAu -3'
miRNA:   3'- aAACGu-----UCGCGGCCGUgCG--------CGGA-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.