Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24483 | 5' | -59.3 | NC_005264.1 | + | 95456 | 0.66 | 0.733535 |
Target: 5'- --cGCuaccGCGCCGGCGgGCGCagCGAg -3' miRNA: 3'- aaaCGuu--CGCGGCCGUgCGCGgaGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 20141 | 0.67 | 0.632102 |
Target: 5'- --gGCAGGCGauGGCGCGcCGCCg--- -3' miRNA: 3'- aaaCGUUCGCggCCGUGC-GCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 26376 | 0.68 | 0.600257 |
Target: 5'- -cUGCGcGGCGCCGucucugaGCGCG-GCCUCAGc -3' miRNA: 3'- aaACGU-UCGCGGC-------CGUGCgCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 47852 | 1.04 | 0.002448 |
Target: 5'- uUUUGCAAGCGCCGGCACGCGCCUCAAg -3' miRNA: 3'- -AAACGUUCGCGGCCGUGCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 30360 | 0.66 | 0.72364 |
Target: 5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3' miRNA: 3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 74238 | 0.66 | 0.713665 |
Target: 5'- --cGUAGcGCGCUGGC-CGCGCUcCAGa -3' miRNA: 3'- aaaCGUU-CGCGGCCGuGCGCGGaGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 129594 | 0.67 | 0.673156 |
Target: 5'- -cUGCAGGCGCugCGGCGCgGCGgcgaagcuUCUCGAg -3' miRNA: 3'- aaACGUUCGCG--GCCGUG-CGC--------GGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 59108 | 0.67 | 0.673156 |
Target: 5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3' miRNA: 3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 8003 | 0.67 | 0.652662 |
Target: 5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3' miRNA: 3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 26476 | 0.67 | 0.632102 |
Target: 5'- --cGCuauucGCGCCGGCA-GCGCC-CAGc -3' miRNA: 3'- aaaCGuu---CGCGGCCGUgCGCGGaGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 82353 | 0.67 | 0.642386 |
Target: 5'- --cGCAcguGUGCCaGGCAgGCGCgUCGAu -3' miRNA: 3'- aaaCGUu--CGCGG-CCGUgCGCGgAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 8783 | 0.67 | 0.662921 |
Target: 5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3' miRNA: 3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 21982 | 0.66 | 0.733535 |
Target: 5'- --gGUAGGgcCGCCGGCuguCGuCGCCUCu- -3' miRNA: 3'- aaaCGUUC--GCGGCCGu--GC-GCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 131569 | 0.67 | 0.632102 |
Target: 5'- -cUGCAuGUGCgCGGCACcugGCGCCUa-- -3' miRNA: 3'- aaACGUuCGCG-GCCGUG---CGCGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 121862 | 0.66 | 0.733535 |
Target: 5'- --aGCGAGgGUCGGCGCaaGCUUCc- -3' miRNA: 3'- aaaCGUUCgCGGCCGUGcgCGGAGuu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 47711 | 0.67 | 0.673156 |
Target: 5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3' miRNA: 3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 55620 | 0.67 | 0.632102 |
Target: 5'- --gGCuGGCGCCGaaugccaaccGCGCGCGCCg--- -3' miRNA: 3'- aaaCGuUCGCGGC----------CGUGCGCGGaguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 106429 | 0.67 | 0.622846 |
Target: 5'- --aGCucgacGGCGCCGcGCucgauaugcgaucguCGCGCCUCAGg -3' miRNA: 3'- aaaCGu----UCGCGGC-CGu--------------GCGCGGAGUU- -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 104816 | 0.66 | 0.733535 |
Target: 5'- --aGCGGGCGCC-GCACGacgGCCUg-- -3' miRNA: 3'- aaaCGUUCGCGGcCGUGCg--CGGAguu -5' |
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24483 | 5' | -59.3 | NC_005264.1 | + | 103012 | 0.66 | 0.70362 |
Target: 5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3' miRNA: 3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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