miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 26476 0.67 0.632102
Target:  5'- --cGCuauucGCGCCGGCA-GCGCC-CAGc -3'
miRNA:   3'- aaaCGuu---CGCGGCCGUgCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 8003 0.67 0.652662
Target:  5'- aUUGCGGG-GCCGGCAgagGCGCC-CGc -3'
miRNA:   3'- aAACGUUCgCGGCCGUg--CGCGGaGUu -5'
24483 5' -59.3 NC_005264.1 + 104533 0.76 0.198245
Target:  5'- --cGCGGGCaGCCGGCgaaGCGCGCCaUCAGa -3'
miRNA:   3'- aaaCGUUCG-CGGCCG---UGCGCGG-AGUU- -5'
24483 5' -59.3 NC_005264.1 + 125031 0.7 0.491385
Target:  5'- --cGCAAacuCGUCGGCgGCGCGCCUCu- -3'
miRNA:   3'- aaaCGUUc--GCGGCCG-UGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 26376 0.68 0.600257
Target:  5'- -cUGCGcGGCGCCGucucugaGCGCG-GCCUCAGc -3'
miRNA:   3'- aaACGU-UCGCGGC-------CGUGCgCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 8783 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 144291 0.69 0.530487
Target:  5'- --cGCuccgacuGaCGCCGGCGCGC-CCUCAGg -3'
miRNA:   3'- aaaCGuu-----C-GCGGCCGUGCGcGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 47711 0.67 0.673156
Target:  5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3'
miRNA:   3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5'
24483 5' -59.3 NC_005264.1 + 59108 0.67 0.673156
Target:  5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3'
miRNA:   3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 9503 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 15506 0.7 0.444487
Target:  5'- --aGaCAAGC-CCGGUACGCGCUUCu- -3'
miRNA:   3'- aaaC-GUUCGcGGCCGUGCGCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 55620 0.67 0.632102
Target:  5'- --gGCuGGCGCCGaaugccaaccGCGCGCGCCg--- -3'
miRNA:   3'- aaaCGuUCGCGGC----------CGUGCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 149730 0.67 0.642386
Target:  5'- cUUGCuguaguGGCGCCGGCGgGCagaggcgaGCCUaCAAu -3'
miRNA:   3'- aAACGu-----UCGCGGCCGUgCG--------CGGA-GUU- -5'
24483 5' -59.3 NC_005264.1 + 96230 0.68 0.560541
Target:  5'- --cGCGacGGCGCCGGCaACGCGgCgCAGc -3'
miRNA:   3'- aaaCGU--UCGCGGCCG-UGCGCgGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 87743 0.7 0.481815
Target:  5'- --aGCucGGCGCCGGCGCcugccgcaGCGCCgCGAa -3'
miRNA:   3'- aaaCGu-UCGCGGCCGUG--------CGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 47852 1.04 0.002448
Target:  5'- uUUUGCAAGCGCCGGCACGCGCCUCAAg -3'
miRNA:   3'- -AAACGUUCGCGGCCGUGCGCGGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 128530 0.68 0.591044
Target:  5'- --aGCcAGCGUCaGGCGCGgCGcCCUCGAg -3'
miRNA:   3'- aaaCGuUCGCGG-CCGUGC-GC-GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 66545 0.66 0.710658
Target:  5'- gUUGCGGGCGUCGGCGauuuccacaagcucCGcCGCCa--- -3'
miRNA:   3'- aAACGUUCGCGGCCGU--------------GC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 42111 0.66 0.693514
Target:  5'- --cGCAGuCGCCGGCAC-CGuCCUCc- -3'
miRNA:   3'- aaaCGUUcGCGGCCGUGcGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 59711 0.66 0.693514
Target:  5'- --cGCGccGCGCCGGCGgcuacCGCGCCg--- -3'
miRNA:   3'- aaaCGUu-CGCGGCCGU-----GCGCGGaguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.