Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24484 | 3' | -56.5 | NC_005264.1 | + | 128513 | 0.66 | 0.924401 |
Target: 5'- cCUCGCGUCagcgagUCaGCCAGcgucagGCGCGGCg -3' miRNA: 3'- -GAGCGUGGga----AGcUGGUCa-----UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 39636 | 0.66 | 0.924401 |
Target: 5'- cCUCGgACCCUcCGcuuccccacACCGcggcGUGgGCGGCa -3' miRNA: 3'- -GAGCgUGGGAaGC---------UGGU----CAUgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 9486 | 0.66 | 0.924401 |
Target: 5'- cCUCGCGUCagcgagUCaGCCAGcgucagGCGCGGCg -3' miRNA: 3'- -GAGCGUGGga----AGcUGGUCa-----UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 40942 | 0.66 | 0.924401 |
Target: 5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3' miRNA: 3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 159969 | 0.66 | 0.924401 |
Target: 5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3' miRNA: 3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 18426 | 0.66 | 0.924401 |
Target: 5'- -gCGCGCCCUcUCGcUCGGcGCGgGGUc -3' miRNA: 3'- gaGCGUGGGA-AGCuGGUCaUGCgCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 156688 | 0.66 | 0.918942 |
Target: 5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3' miRNA: 3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 158663 | 0.66 | 0.918942 |
Target: 5'- cCUCGgACCCUcCGcuucccacACCGcggcGUGgGCGGCa -3' miRNA: 3'- -GAGCgUGGGAaGC--------UGGU----CAUgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 124077 | 0.66 | 0.918942 |
Target: 5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3' miRNA: 3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 44713 | 0.66 | 0.918942 |
Target: 5'- -aUGUACCCcacUCGGCC--UACGCGGa -3' miRNA: 3'- gaGCGUGGGa--AGCUGGucAUGCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 37662 | 0.66 | 0.918942 |
Target: 5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3' miRNA: 3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 5050 | 0.66 | 0.918942 |
Target: 5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3' miRNA: 3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 427 | 0.66 | 0.913832 |
Target: 5'- uUCGCGCCCcucugcccuagcgucUCGuACCuaUGCGCGGUc -3' miRNA: 3'- gAGCGUGGGa--------------AGC-UGGucAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 119454 | 0.66 | 0.913832 |
Target: 5'- uUCGCGCCCcucugcccuagcgucUCGuACCuaUGCGCGGUc -3' miRNA: 3'- gAGCGUGGGa--------------AGC-UGGucAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 46406 | 0.66 | 0.913253 |
Target: 5'- gUCGC-CCCcgCGGCCAG-ACGCccccaGCg -3' miRNA: 3'- gAGCGuGGGaaGCUGGUCaUGCGc----CG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 110095 | 0.66 | 0.913253 |
Target: 5'- aUCGUACCCUcgccgugugaUGGCCGGUGCGagucGCa -3' miRNA: 3'- gAGCGUGGGAa---------GCUGGUCAUGCgc--CG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 24361 | 0.66 | 0.913253 |
Target: 5'- -cCGcCGCUCUggcaUGACCGGcuuCGCGGCu -3' miRNA: 3'- gaGC-GUGGGAa---GCUGGUCau-GCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 123182 | 0.66 | 0.913253 |
Target: 5'- uCUCGCAgaguuguaCUUgGACgAGgccGCGCGGCa -3' miRNA: 3'- -GAGCGUgg------GAAgCUGgUCa--UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 146368 | 0.66 | 0.907334 |
Target: 5'- aCUCGuCGCCCcccagcgcuggUUCGACCAcGUucacaccCGCGGg -3' miRNA: 3'- -GAGC-GUGGG-----------AAGCUGGU-CAu------GCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 798 | 0.66 | 0.907334 |
Target: 5'- --aGCGCUCcaguaCGGCUgGGUGCGCGGCc -3' miRNA: 3'- gagCGUGGGaa---GCUGG-UCAUGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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