miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 128955 0.66 0.901187
Target:  5'- uCUCGCGCUaggUUCGAagCAGagACGcCGGCg -3'
miRNA:   3'- -GAGCGUGGg--AAGCUg-GUCa-UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 5050 0.66 0.918942
Target:  5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 44713 0.66 0.918942
Target:  5'- -aUGUACCCcacUCGGCC--UACGCGGa -3'
miRNA:   3'- gaGCGUGGGa--AGCUGGucAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 18426 0.66 0.924401
Target:  5'- -gCGCGCCCUcUCGcUCGGcGCGgGGUc -3'
miRNA:   3'- gaGCGUGGGA-AGCuGGUCaUGCgCCG- -5'
24484 3' -56.5 NC_005264.1 + 9486 0.66 0.924401
Target:  5'- cCUCGCGUCagcgagUCaGCCAGcgucagGCGCGGCg -3'
miRNA:   3'- -GAGCGUGGga----AGcUGGUCa-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 158663 0.66 0.918942
Target:  5'- cCUCGgACCCUcCGcuucccacACCGcggcGUGgGCGGCa -3'
miRNA:   3'- -GAGCgUGGGAaGC--------UGGU----CAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128513 0.66 0.924401
Target:  5'- cCUCGCGUCagcgagUCaGCCAGcgucagGCGCGGCg -3'
miRNA:   3'- -GAGCGUGGga----AGcUGGUCa-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 137925 0.66 0.89286
Target:  5'- uCUUGUcCCCUUUGgugguGCCGGUAucguugcgcgacuuCGCGGCc -3'
miRNA:   3'- -GAGCGuGGGAAGC-----UGGUCAU--------------GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 66524 0.66 0.894815
Target:  5'- -gCGUGCCCUgacgaCGACCGcGUugcggGCGuCGGCg -3'
miRNA:   3'- gaGCGUGGGAa----GCUGGU-CA-----UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 39636 0.66 0.924401
Target:  5'- cCUCGgACCCUcCGcuuccccacACCGcggcGUGgGCGGCa -3'
miRNA:   3'- -GAGCgUGGGAaGC---------UGGU----CAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 159969 0.66 0.924401
Target:  5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3'
miRNA:   3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 119454 0.66 0.913832
Target:  5'- uUCGCGCCCcucugcccuagcgucUCGuACCuaUGCGCGGUc -3'
miRNA:   3'- gAGCGUGGGa--------------AGC-UGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 110095 0.66 0.913253
Target:  5'- aUCGUACCCUcgccgugugaUGGCCGGUGCGagucGCa -3'
miRNA:   3'- gAGCGUGGGAa---------GCUGGUCAUGCgc--CG- -5'
24484 3' -56.5 NC_005264.1 + 798 0.66 0.907334
Target:  5'- --aGCGCUCcaguaCGGCUgGGUGCGCGGCc -3'
miRNA:   3'- gagCGUGGGaa---GCUGG-UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 124077 0.66 0.918942
Target:  5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 158058 0.66 0.901187
Target:  5'- uUCGCcaacgACCCagUCGgacugGCCgAGUucGCGCGGCg -3'
miRNA:   3'- gAGCG-----UGGGa-AGC-----UGG-UCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 40942 0.66 0.924401
Target:  5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3'
miRNA:   3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 156688 0.66 0.918942
Target:  5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3'
miRNA:   3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 37662 0.66 0.918942
Target:  5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3'
miRNA:   3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 120950 0.66 0.901187
Target:  5'- aUCcCAUCCUcCGGCaagagucuGUGCGCGGCc -3'
miRNA:   3'- gAGcGUGGGAaGCUGgu------CAUGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.