Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24484 | 3' | -56.5 | NC_005264.1 | + | 47196 | 1.13 | 0.001777 |
Target: 5'- aCUCGCACCCUUCGACCAGUACGCGGCg -3' miRNA: 3'- -GAGCGUGGGAAGCUGGUCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 121878 | 0.79 | 0.261308 |
Target: 5'- gCUCGCGCCgucgcccgcugcggCUgcgaUCGACCGGgGCGCGGCg -3' miRNA: 3'- -GAGCGUGG--------------GA----AGCUGGUCaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 2852 | 0.79 | 0.261308 |
Target: 5'- gCUCGCGCCgucgcccgcugcggCUgcgaUCGACCGGgGCGCGGCg -3' miRNA: 3'- -GAGCGUGG--------------GA----AGCUGGUCaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 128758 | 0.79 | 0.28873 |
Target: 5'- -aCGUGgaagUCCUUCGcGCCAGUGCGCGGCu -3' miRNA: 3'- gaGCGU----GGGAAGC-UGGUCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 29127 | 0.76 | 0.410169 |
Target: 5'- gUCGUGCCagaggcaGcACCAGUGCGCGGCg -3' miRNA: 3'- gAGCGUGGgaag---C-UGGUCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 93320 | 0.75 | 0.463206 |
Target: 5'- cCUCGUGCuCCUagGGCCAGcuaacgGCGUGGCa -3' miRNA: 3'- -GAGCGUG-GGAagCUGGUCa-----UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 69843 | 0.74 | 0.500488 |
Target: 5'- -cUGCcCCCgcuaCGGCCGGUGCuGCGGCg -3' miRNA: 3'- gaGCGuGGGaa--GCUGGUCAUG-CGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 9536 | 0.74 | 0.500488 |
Target: 5'- aCUCGUugCCUUUGucgcucgcaGCCGGUG-GCGGCu -3' miRNA: 3'- -GAGCGugGGAAGC---------UGGUCAUgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 33608 | 0.74 | 0.491038 |
Target: 5'- gCUUGcCGCCgCUaaaguUCGGCCAGaUugGCGGCg -3' miRNA: 3'- -GAGC-GUGG-GA-----AGCUGGUC-AugCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 71299 | 0.73 | 0.565619 |
Target: 5'- -cCGCGCCCgauaugCGcgagcaugaacuugGCgAGUGCGCGGCa -3' miRNA: 3'- gaGCGUGGGaa----GC--------------UGgUCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 74792 | 0.72 | 0.628704 |
Target: 5'- aUgGCGCCCguaUUGACCuGUACGCuucGGCc -3' miRNA: 3'- gAgCGUGGGa--AGCUGGuCAUGCG---CCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 88139 | 0.72 | 0.608582 |
Target: 5'- -cCGCGCCCUacaagucgUUGACUAgguuuccgcuGUACGCGGUg -3' miRNA: 3'- gaGCGUGGGA--------AGCUGGU----------CAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 75204 | 0.72 | 0.636759 |
Target: 5'- -cCGCGCCCcacgcggcugcaUCGGCCc-UGCGCGGCg -3' miRNA: 3'- gaGCGUGGGa-----------AGCUGGucAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 132862 | 0.72 | 0.638773 |
Target: 5'- -aCGUugCCagCGGCCAGggACGCGGa -3' miRNA: 3'- gaGCGugGGaaGCUGGUCa-UGCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 144265 | 0.72 | 0.588527 |
Target: 5'- gCUCGCugCCUUgGGCCGGcggAUGCcGCu -3' miRNA: 3'- -GAGCGugGGAAgCUGGUCa--UGCGcCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 144179 | 0.72 | 0.598543 |
Target: 5'- aUCGCACCaugUGACCucauuagcauacGGUGgGCGGCa -3' miRNA: 3'- gAGCGUGGgaaGCUGG------------UCAUgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 27665 | 0.71 | 0.668917 |
Target: 5'- --gGCGCUCg--GACCgaGGUACGCGGCu -3' miRNA: 3'- gagCGUGGGaagCUGG--UCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 128720 | 0.71 | 0.668917 |
Target: 5'- gCUCGCGCCUcgacgcuguUUCGGCCGcugagccauuGUGCccgccGCGGCa -3' miRNA: 3'- -GAGCGUGGG---------AAGCUGGU----------CAUG-----CGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 86754 | 0.71 | 0.658887 |
Target: 5'- uUCGCGCCCguagagccgUCGACgCu---CGCGGCg -3' miRNA: 3'- gAGCGUGGGa--------AGCUG-GucauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 67281 | 0.71 | 0.678919 |
Target: 5'- gUCGCGCUagcgcgucggCUUCGAagGGUAuCGCGGCg -3' miRNA: 3'- gAGCGUGG----------GAAGCUggUCAU-GCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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