miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 47196 1.13 0.001777
Target:  5'- aCUCGCACCCUUCGACCAGUACGCGGCg -3'
miRNA:   3'- -GAGCGUGGGAAGCUGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 121878 0.79 0.261308
Target:  5'- gCUCGCGCCgucgcccgcugcggCUgcgaUCGACCGGgGCGCGGCg -3'
miRNA:   3'- -GAGCGUGG--------------GA----AGCUGGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 2852 0.79 0.261308
Target:  5'- gCUCGCGCCgucgcccgcugcggCUgcgaUCGACCGGgGCGCGGCg -3'
miRNA:   3'- -GAGCGUGG--------------GA----AGCUGGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128758 0.79 0.28873
Target:  5'- -aCGUGgaagUCCUUCGcGCCAGUGCGCGGCu -3'
miRNA:   3'- gaGCGU----GGGAAGC-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 29127 0.76 0.410169
Target:  5'- gUCGUGCCagaggcaGcACCAGUGCGCGGCg -3'
miRNA:   3'- gAGCGUGGgaag---C-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 93320 0.75 0.463206
Target:  5'- cCUCGUGCuCCUagGGCCAGcuaacgGCGUGGCa -3'
miRNA:   3'- -GAGCGUG-GGAagCUGGUCa-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 33608 0.74 0.491038
Target:  5'- gCUUGcCGCCgCUaaaguUCGGCCAGaUugGCGGCg -3'
miRNA:   3'- -GAGC-GUGG-GA-----AGCUGGUC-AugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 69843 0.74 0.500488
Target:  5'- -cUGCcCCCgcuaCGGCCGGUGCuGCGGCg -3'
miRNA:   3'- gaGCGuGGGaa--GCUGGUCAUG-CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 9536 0.74 0.500488
Target:  5'- aCUCGUugCCUUUGucgcucgcaGCCGGUG-GCGGCu -3'
miRNA:   3'- -GAGCGugGGAAGC---------UGGUCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 71299 0.73 0.565619
Target:  5'- -cCGCGCCCgauaugCGcgagcaugaacuugGCgAGUGCGCGGCa -3'
miRNA:   3'- gaGCGUGGGaa----GC--------------UGgUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 144265 0.72 0.588527
Target:  5'- gCUCGCugCCUUgGGCCGGcggAUGCcGCu -3'
miRNA:   3'- -GAGCGugGGAAgCUGGUCa--UGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 144179 0.72 0.598543
Target:  5'- aUCGCACCaugUGACCucauuagcauacGGUGgGCGGCa -3'
miRNA:   3'- gAGCGUGGgaaGCUGG------------UCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 88139 0.72 0.608582
Target:  5'- -cCGCGCCCUacaagucgUUGACUAgguuuccgcuGUACGCGGUg -3'
miRNA:   3'- gaGCGUGGGA--------AGCUGGU----------CAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 74792 0.72 0.628704
Target:  5'- aUgGCGCCCguaUUGACCuGUACGCuucGGCc -3'
miRNA:   3'- gAgCGUGGGa--AGCUGGuCAUGCG---CCG- -5'
24484 3' -56.5 NC_005264.1 + 75204 0.72 0.636759
Target:  5'- -cCGCGCCCcacgcggcugcaUCGGCCc-UGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGa-----------AGCUGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 132862 0.72 0.638773
Target:  5'- -aCGUugCCagCGGCCAGggACGCGGa -3'
miRNA:   3'- gaGCGugGGaaGCUGGUCa-UGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 86754 0.71 0.658887
Target:  5'- uUCGCGCCCguagagccgUCGACgCu---CGCGGCg -3'
miRNA:   3'- gAGCGUGGGa--------AGCUG-GucauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 27665 0.71 0.668917
Target:  5'- --gGCGCUCg--GACCgaGGUACGCGGCu -3'
miRNA:   3'- gagCGUGGGaagCUGG--UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128720 0.71 0.668917
Target:  5'- gCUCGCGCCUcgacgcuguUUCGGCCGcugagccauuGUGCccgccGCGGCa -3'
miRNA:   3'- -GAGCGUGGG---------AAGCUGGU----------CAUG-----CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 67281 0.71 0.678919
Target:  5'- gUCGCGCUagcgcgucggCUUCGAagGGUAuCGCGGCg -3'
miRNA:   3'- gAGCGUGG----------GAAGCUggUCAU-GCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.