Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24484 | 3' | -56.5 | NC_005264.1 | + | 20566 | 0.7 | 0.698801 |
Target: 5'- aUCGCGCUCU---GCCAGcGCGCGGg -3' miRNA: 3'- gAGCGUGGGAagcUGGUCaUGCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 111905 | 0.7 | 0.698801 |
Target: 5'- -aCGCGCgauuCCU-CGACCAGUuCGUGGUg -3' miRNA: 3'- gaGCGUG----GGAaGCUGGUCAuGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 46437 | 0.7 | 0.717489 |
Target: 5'- -cUGCGCUCgacgUCGGCCuGcggcuuuUGCGCGGCg -3' miRNA: 3'- gaGCGUGGGa---AGCUGGuC-------AUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 65170 | 0.7 | 0.728196 |
Target: 5'- --gGCGCCCUcUCuGGCCAuGgcCGCGGCc -3' miRNA: 3'- gagCGUGGGA-AG-CUGGU-CauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 41707 | 0.7 | 0.728196 |
Target: 5'- gCUCGUAgCCCUcuacaucuucUCGcGCCAGgcgGCaGCGGCg -3' miRNA: 3'- -GAGCGU-GGGA----------AGC-UGGUCa--UG-CGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 130995 | 0.7 | 0.728196 |
Target: 5'- gUCGCGCCCaugUCuuGCCGc-GCGCGGCa -3' miRNA: 3'- gAGCGUGGGa--AGc-UGGUcaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 85812 | 0.7 | 0.737846 |
Target: 5'- gUCGCugUCUgUGACCAGaaGCGCGcGCu -3' miRNA: 3'- gAGCGugGGAaGCUGGUCa-UGCGC-CG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 159224 | 0.7 | 0.737846 |
Target: 5'- -gCGCGCCCgcccucgCGGCCccc-CGCGGCg -3' miRNA: 3'- gaGCGUGGGaa-----GCUGGucauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 40197 | 0.7 | 0.737846 |
Target: 5'- -gCGCGCCCgcccucgCGGCCccc-CGCGGCg -3' miRNA: 3'- gaGCGUGGGaa-----GCUGGucauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 32416 | 0.7 | 0.741681 |
Target: 5'- aUCG-GCUCUUCcaaguaaauucuacgGaACCGGUACGCGGCg -3' miRNA: 3'- gAGCgUGGGAAG---------------C-UGGUCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 3517 | 0.69 | 0.756869 |
Target: 5'- cCUCGCcguccGCCUcgUCGaACCGcgACGCGGCg -3' miRNA: 3'- -GAGCG-----UGGGa-AGC-UGGUcaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 122544 | 0.69 | 0.756869 |
Target: 5'- cCUCGCcguccGCCUcgUCGaACCGcgACGCGGCg -3' miRNA: 3'- -GAGCG-----UGGGa-AGC-UGGUcaUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 65799 | 0.69 | 0.756869 |
Target: 5'- -aUGCGCUUaUCGACU--UGCGCGGCg -3' miRNA: 3'- gaGCGUGGGaAGCUGGucAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 139960 | 0.69 | 0.769935 |
Target: 5'- aUCGUGCCCgaaccaggggucuauUUCGAUaGGUucGCGCGGCc -3' miRNA: 3'- gAGCGUGGG---------------AAGCUGgUCA--UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 90551 | 0.69 | 0.769935 |
Target: 5'- aUCGCACCgCgucuccucguugcCGGCCAGUACGCcucuGCa -3' miRNA: 3'- gAGCGUGG-Gaa-----------GCUGGUCAUGCGc---CG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 12776 | 0.69 | 0.775465 |
Target: 5'- -aCGCAgCCgcaCGACCGcUAgGCGGCa -3' miRNA: 3'- gaGCGUgGGaa-GCUGGUcAUgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 43922 | 0.69 | 0.775465 |
Target: 5'- gUCGC-CUCgacgUCGaggGCCaAGUACGCGGUg -3' miRNA: 3'- gAGCGuGGGa---AGC---UGG-UCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 113036 | 0.69 | 0.775465 |
Target: 5'- -cCGCGgCCg-CGACUGGgcCGCGGCg -3' miRNA: 3'- gaGCGUgGGaaGCUGGUCauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 131802 | 0.69 | 0.775465 |
Target: 5'- -aCGCAgCCgcaCGACCGcUAgGCGGCa -3' miRNA: 3'- gaGCGUgGGaa-GCUGGUcAUgCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 97418 | 0.69 | 0.784582 |
Target: 5'- gCUCGacacaAUCCUU-GACCAGgGCGCGGa -3' miRNA: 3'- -GAGCg----UGGGAAgCUGGUCaUGCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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