Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24484 | 3' | -56.5 | NC_005264.1 | + | 97418 | 0.69 | 0.784582 |
Target: 5'- gCUCGacacaAUCCUU-GACCAGgGCGCGGa -3' miRNA: 3'- -GAGCg----UGGGAAgCUGGUCaUGCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 68704 | 0.69 | 0.793566 |
Target: 5'- aCUCGCAgUCCauuaGGCCAGUucugaGCGCGGg -3' miRNA: 3'- -GAGCGU-GGGaag-CUGGUCA-----UGCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 98686 | 0.69 | 0.802409 |
Target: 5'- gCUUGCACac--CGGCCGGauCGCGGCg -3' miRNA: 3'- -GAGCGUGggaaGCUGGUCauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 63821 | 0.69 | 0.802409 |
Target: 5'- -cCGCGCgC-UCGACCAGcucuaguaucgGCGCGGUc -3' miRNA: 3'- gaGCGUGgGaAGCUGGUCa----------UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 30484 | 0.68 | 0.811103 |
Target: 5'- cCUCGCGCCCcUCuccuCCuGcuccGCGCGGCc -3' miRNA: 3'- -GAGCGUGGGaAGcu--GGuCa---UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 146878 | 0.68 | 0.811103 |
Target: 5'- uUCGCACgUUUCugGACCGGUG-GCGGa -3' miRNA: 3'- gAGCGUGgGAAG--CUGGUCAUgCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 149511 | 0.68 | 0.811103 |
Target: 5'- cCUCGCGCCCcUCuccuCCuGcuccGCGCGGCc -3' miRNA: 3'- -GAGCGUGGGaAGcu--GGuCa---UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 106717 | 0.68 | 0.819639 |
Target: 5'- aCUCGCGCgCCUaguggUCGACaaggauGGUGCGgGGg -3' miRNA: 3'- -GAGCGUG-GGA-----AGCUGg-----UCAUGCgCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 58862 | 0.68 | 0.819639 |
Target: 5'- -aCGguUUCUUCGGCCguagGGUGCGCaGCg -3' miRNA: 3'- gaGCguGGGAAGCUGG----UCAUGCGcCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 30086 | 0.68 | 0.820484 |
Target: 5'- -cCGCGCCCggacagaaucgcgagUCGAgaugCGGgcgGCGCGGCa -3' miRNA: 3'- gaGCGUGGGa--------------AGCUg---GUCa--UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 3775 | 0.68 | 0.82801 |
Target: 5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3' miRNA: 3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 122801 | 0.68 | 0.82801 |
Target: 5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3' miRNA: 3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 77190 | 0.68 | 0.83621 |
Target: 5'- gUCGCGCUCgcgGGCCAu--CGCGGCc -3' miRNA: 3'- gAGCGUGGGaagCUGGUcauGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 77276 | 0.68 | 0.83621 |
Target: 5'- cCUUGgGCCUggaaCGAauUgGGUGCGCGGCa -3' miRNA: 3'- -GAGCgUGGGaa--GCU--GgUCAUGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 91019 | 0.68 | 0.83621 |
Target: 5'- uUCGCgACCCcgcgggcggcUUCGGCCGcUAUGCGGa -3' miRNA: 3'- gAGCG-UGGG----------AAGCUGGUcAUGCGCCg -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 102544 | 0.68 | 0.844229 |
Target: 5'- gUCGCGCCCgaaucCGAgUAcGUcaugcccgACGCGGCg -3' miRNA: 3'- gAGCGUGGGaa---GCUgGU-CA--------UGCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 125238 | 0.68 | 0.844229 |
Target: 5'- -aCGCGUCCUUUGACCccccgcCGCGGCc -3' miRNA: 3'- gaGCGUGGGAAGCUGGucau--GCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 6211 | 0.68 | 0.844229 |
Target: 5'- -aCGCGUCCUUUGACCccccgcCGCGGCc -3' miRNA: 3'- gaGCGUGGGAAGCUGGucau--GCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 6692 | 0.67 | 0.849733 |
Target: 5'- -aUGCGCCCUUCGuagacucgaaugcaAUCAGUccuagcguCGCGGUa -3' miRNA: 3'- gaGCGUGGGAAGC--------------UGGUCAu-------GCGCCG- -5' |
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24484 | 3' | -56.5 | NC_005264.1 | + | 145965 | 0.67 | 0.851288 |
Target: 5'- -cUGCGaCCUUCG-CCGGcgcgaauacgaacUGCGCGGCg -3' miRNA: 3'- gaGCGUgGGAAGCuGGUC-------------AUGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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