miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 133894 0.66 0.907334
Target:  5'- -gCGUucACCCa-CGGCUcGUACGCGGUa -3'
miRNA:   3'- gaGCG--UGGGaaGCUGGuCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 146368 0.66 0.907334
Target:  5'- aCUCGuCGCCCcccagcgcuggUUCGACCAcGUucacaccCGCGGg -3'
miRNA:   3'- -GAGC-GUGGG-----------AAGCUGGU-CAu------GCGCCg -5'
24484 3' -56.5 NC_005264.1 + 68980 0.66 0.907334
Target:  5'- gCUCGCcaGCUUagCgGGCCAGUGgccCGCGGCc -3'
miRNA:   3'- -GAGCG--UGGGaaG-CUGGUCAU---GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 49159 0.66 0.907334
Target:  5'- cCUUGCACCC--CGACCAucACGUaGCu -3'
miRNA:   3'- -GAGCGUGGGaaGCUGGUcaUGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 129587 0.66 0.907334
Target:  5'- -gCGCGCUCUgcaGGCgCuGcgGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGAag-CUG-GuCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 17855 0.66 0.901187
Target:  5'- -gCGCGCUgUUCGACCGcGUGagcaauCGGCg -3'
miRNA:   3'- gaGCGUGGgAAGCUGGU-CAUgc----GCCG- -5'
24484 3' -56.5 NC_005264.1 + 120950 0.66 0.901187
Target:  5'- aUCcCAUCCUcCGGCaagagucuGUGCGCGGCc -3'
miRNA:   3'- gAGcGUGGGAaGCUGgu------CAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 9929 0.66 0.901187
Target:  5'- uCUCGCGCUaggUUCGAagCAGagACGcCGGCg -3'
miRNA:   3'- -GAGCGUGGg--AAGCUg-GUCa-UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 1924 0.66 0.901187
Target:  5'- aUCcCAUCCUcCGGCaagagucuGUGCGCGGCc -3'
miRNA:   3'- gAGcGUGGGAaGCUGgu------CAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 22192 0.66 0.901187
Target:  5'- uUCGUAUCCaucugUGGC--GUGCGCGGCa -3'
miRNA:   3'- gAGCGUGGGaa---GCUGguCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 26361 0.66 0.901187
Target:  5'- -gUGCGCCg--CGGCaGGcUGCGCGGCg -3'
miRNA:   3'- gaGCGUGGgaaGCUGgUC-AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 39031 0.66 0.901187
Target:  5'- uUCGCcaacgACCCagUCGgacugGCCgAGUucGCGCGGCg -3'
miRNA:   3'- gAGCG-----UGGGa-AGC-----UGG-UCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128955 0.66 0.901187
Target:  5'- uCUCGCGCUaggUUCGAagCAGagACGcCGGCg -3'
miRNA:   3'- -GAGCGUGGg--AAGCUg-GUCa-UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 158058 0.66 0.901187
Target:  5'- uUCGCcaacgACCCagUCGgacugGCCgAGUucGCGCGGCg -3'
miRNA:   3'- gAGCG-----UGGGa-AGC-----UGG-UCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 94392 0.66 0.894815
Target:  5'- gUCGU-CCCUcgUCuauGAUCAGgcCGCGGCg -3'
miRNA:   3'- gAGCGuGGGA--AG---CUGGUCauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 142888 0.66 0.894815
Target:  5'- -cCGCGCCUUUCu-CCAGU-CaCGGCg -3'
miRNA:   3'- gaGCGUGGGAAGcuGGUCAuGcGCCG- -5'
24484 3' -56.5 NC_005264.1 + 11969 0.66 0.894815
Target:  5'- gUCGCGCCaugUCuuGCCGc-GCGCGGCa -3'
miRNA:   3'- gAGCGUGGga-AGc-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 120468 0.66 0.894815
Target:  5'- gUCGC-CUCgaagaUCGcAUCGGUGCGCGGa -3'
miRNA:   3'- gAGCGuGGGa----AGC-UGGUCAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 66524 0.66 0.894815
Target:  5'- -gCGUGCCCUgacgaCGACCGcGUugcggGCGuCGGCg -3'
miRNA:   3'- gaGCGUGGGAa----GCUGGU-CA-----UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 137925 0.66 0.89286
Target:  5'- uCUUGUcCCCUUUGgugguGCCGGUAucguugcgcgacuuCGCGGCc -3'
miRNA:   3'- -GAGCGuGGGAAGC-----UGGUCAU--------------GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.