miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 52513 0.67 0.888221
Target:  5'- aCUUGCugCUggauUUCGugCGccGCGUGGCa -3'
miRNA:   3'- -GAGCGugGG----AAGCugGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 142951 0.67 0.888221
Target:  5'- --aGCACCCgaaaUGGCUA--GCGCGGCc -3'
miRNA:   3'- gagCGUGGGaa--GCUGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 82167 0.67 0.888221
Target:  5'- aCUCaaaCugCCgugCGGCCGGUcgGCGGCg -3'
miRNA:   3'- -GAGc--GugGGaa-GCUGGUCAugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 96222 0.67 0.888221
Target:  5'- cCUCGgGCCgCgaCGgcGCCGGcaACGCGGCg -3'
miRNA:   3'- -GAGCgUGG-GaaGC--UGGUCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 116804 0.67 0.888221
Target:  5'- aUUGCGCCCUggcaUCGGCCA--GCG-GGUu -3'
miRNA:   3'- gAGCGUGGGA----AGCUGGUcaUGCgCCG- -5'
24484 3' -56.5 NC_005264.1 + 68468 0.67 0.8862
Target:  5'- -aCGaCACCaCUUCG-UCGGUgagguuuagaucgaACGCGGCg -3'
miRNA:   3'- gaGC-GUGG-GAAGCuGGUCA--------------UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 82890 0.67 0.881408
Target:  5'- gUCGCGCUCaUCucugaacaucuuGAUCuGUACGUGGCc -3'
miRNA:   3'- gAGCGUGGGaAG------------CUGGuCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 23942 0.67 0.881408
Target:  5'- gUCGCGCCgc-CGAUgGGUAUGUGGg -3'
miRNA:   3'- gAGCGUGGgaaGCUGgUCAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 79867 0.67 0.881408
Target:  5'- -cCGUA-CCUUCGuCaCGGggGCGCGGCg -3'
miRNA:   3'- gaGCGUgGGAAGCuG-GUCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 108666 0.67 0.881408
Target:  5'- gUCGUcUCC--CGGCCAGgGCGCGGUu -3'
miRNA:   3'- gAGCGuGGGaaGCUGGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 37358 0.67 0.877217
Target:  5'- -cCGCGCucgaaaaagagcgagCCUcCGAgCAGgGCGCGGCa -3'
miRNA:   3'- gaGCGUG---------------GGAaGCUgGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 73050 0.67 0.874381
Target:  5'- --aGCGCCggcgguaugCGGCCAGagACGUGGCg -3'
miRNA:   3'- gagCGUGGgaa------GCUGGUCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 42007 0.67 0.874381
Target:  5'- uUCGUGCUCgUCGGCCAcg--GCGGCa -3'
miRNA:   3'- gAGCGUGGGaAGCUGGUcaugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 30528 0.67 0.874381
Target:  5'- uCUCGCGCagUUUGGCCGac-CGCGGUg -3'
miRNA:   3'- -GAGCGUGggAAGCUGGUcauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 49588 0.67 0.874381
Target:  5'- -gCGCACgCCgccggCGACCAGgacgACGgGGg -3'
miRNA:   3'- gaGCGUG-GGaa---GCUGGUCa---UGCgCCg -5'
24484 3' -56.5 NC_005264.1 + 72206 0.67 0.872232
Target:  5'- -gCGCGCCCUUCGGgguuGUGCGUuuaugucgagccguGGCa -3'
miRNA:   3'- gaGCGUGGGAAGCUggu-CAUGCG--------------CCG- -5'
24484 3' -56.5 NC_005264.1 + 56113 0.67 0.867144
Target:  5'- -cCGCACCauccuugUCGACCAcUAgGCGcGCg -3'
miRNA:   3'- gaGCGUGGga-----AGCUGGUcAUgCGC-CG- -5'
24484 3' -56.5 NC_005264.1 + 84854 0.67 0.867144
Target:  5'- gCUCGguauCGCCCgcu--CCGGUacGCGCGGCg -3'
miRNA:   3'- -GAGC----GUGGGaagcuGGUCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 49339 0.67 0.867144
Target:  5'- uUCGCGC---UCGGCCcggaGGaACGCGGCa -3'
miRNA:   3'- gAGCGUGggaAGCUGG----UCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 143412 0.67 0.867144
Target:  5'- -cCGCGCCCcgCGGCCAc-ACcCGGCg -3'
miRNA:   3'- gaGCGUGGGaaGCUGGUcaUGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.