miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 130067 0.67 0.867144
Target:  5'- gUCGCugCCguggCGAUgauucauaCAGUAgGCGGUc -3'
miRNA:   3'- gAGCGugGGaa--GCUG--------GUCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 131661 0.67 0.859703
Target:  5'- --gGUGCCCgccgccaGACC-GUugGCGGCa -3'
miRNA:   3'- gagCGUGGGaag----CUGGuCAugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 107914 0.67 0.859703
Target:  5'- aCUCGCAgCCgUUCG-CCAGcaGCGCcGCg -3'
miRNA:   3'- -GAGCGU-GGgAAGCuGGUCa-UGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 106718 0.67 0.859703
Target:  5'- gCUCGCcguuACCUgcaggUUGAUCuugcgaGGUAUGCGGCa -3'
miRNA:   3'- -GAGCG----UGGGa----AGCUGG------UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 155929 0.67 0.858191
Target:  5'- aUCGCGCCCacggaaagccgCGcGCUGGgacUGCGCGGCu -3'
miRNA:   3'- gAGCGUGGGaa---------GC-UGGUC---AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 28140 0.67 0.852063
Target:  5'- -cUGCGCUUugaUUCG-CCAGUGCggGCGGCu -3'
miRNA:   3'- gaGCGUGGG---AAGCuGGUCAUG--CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 145965 0.67 0.851288
Target:  5'- -cUGCGaCCUUCG-CCGGcgcgaauacgaacUGCGCGGCg -3'
miRNA:   3'- gaGCGUgGGAAGCuGGUC-------------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 6692 0.67 0.849733
Target:  5'- -aUGCGCCCUUCGuagacucgaaugcaAUCAGUccuagcguCGCGGUa -3'
miRNA:   3'- gaGCGUGGGAAGC--------------UGGUCAu-------GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 125238 0.68 0.844229
Target:  5'- -aCGCGUCCUUUGACCccccgcCGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAGCUGGucau--GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 6211 0.68 0.844229
Target:  5'- -aCGCGUCCUUUGACCccccgcCGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAGCUGGucau--GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 102544 0.68 0.844229
Target:  5'- gUCGCGCCCgaaucCGAgUAcGUcaugcccgACGCGGCg -3'
miRNA:   3'- gAGCGUGGGaa---GCUgGU-CA--------UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 91019 0.68 0.83621
Target:  5'- uUCGCgACCCcgcgggcggcUUCGGCCGcUAUGCGGa -3'
miRNA:   3'- gAGCG-UGGG----------AAGCUGGUcAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 77190 0.68 0.83621
Target:  5'- gUCGCGCUCgcgGGCCAu--CGCGGCc -3'
miRNA:   3'- gAGCGUGGGaagCUGGUcauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 77276 0.68 0.83621
Target:  5'- cCUUGgGCCUggaaCGAauUgGGUGCGCGGCa -3'
miRNA:   3'- -GAGCgUGGGaa--GCU--GgUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 122801 0.68 0.82801
Target:  5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3'
miRNA:   3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 3775 0.68 0.82801
Target:  5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3'
miRNA:   3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 30086 0.68 0.820484
Target:  5'- -cCGCGCCCggacagaaucgcgagUCGAgaugCGGgcgGCGCGGCa -3'
miRNA:   3'- gaGCGUGGGa--------------AGCUg---GUCa--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 106717 0.68 0.819639
Target:  5'- aCUCGCGCgCCUaguggUCGACaaggauGGUGCGgGGg -3'
miRNA:   3'- -GAGCGUG-GGA-----AGCUGg-----UCAUGCgCCg -5'
24484 3' -56.5 NC_005264.1 + 58862 0.68 0.819639
Target:  5'- -aCGguUUCUUCGGCCguagGGUGCGCaGCg -3'
miRNA:   3'- gaGCguGGGAAGCUGG----UCAUGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 149511 0.68 0.811103
Target:  5'- cCUCGCGCCCcUCuccuCCuGcuccGCGCGGCc -3'
miRNA:   3'- -GAGCGUGGGaAGcu--GGuCa---UGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.