miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 427 0.66 0.913832
Target:  5'- uUCGCGCCCcucugcccuagcgucUCGuACCuaUGCGCGGUc -3'
miRNA:   3'- gAGCGUGGGa--------------AGC-UGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 798 0.66 0.907334
Target:  5'- --aGCGCUCcaguaCGGCUgGGUGCGCGGCc -3'
miRNA:   3'- gagCGUGGGaa---GCUGG-UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 1924 0.66 0.901187
Target:  5'- aUCcCAUCCUcCGGCaagagucuGUGCGCGGCc -3'
miRNA:   3'- gAGcGUGGGAaGCUGgu------CAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 2852 0.79 0.261308
Target:  5'- gCUCGCGCCgucgcccgcugcggCUgcgaUCGACCGGgGCGCGGCg -3'
miRNA:   3'- -GAGCGUGG--------------GA----AGCUGGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 3517 0.69 0.756869
Target:  5'- cCUCGCcguccGCCUcgUCGaACCGcgACGCGGCg -3'
miRNA:   3'- -GAGCG-----UGGGa-AGC-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 3775 0.68 0.82801
Target:  5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3'
miRNA:   3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 5050 0.66 0.918942
Target:  5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 6211 0.68 0.844229
Target:  5'- -aCGCGUCCUUUGACCccccgcCGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAGCUGGucau--GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 6692 0.67 0.849733
Target:  5'- -aUGCGCCCUUCGuagacucgaaugcaAUCAGUccuagcguCGCGGUa -3'
miRNA:   3'- gaGCGUGGGAAGC--------------UGGUCAu-------GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 9486 0.66 0.924401
Target:  5'- cCUCGCGUCagcgagUCaGCCAGcgucagGCGCGGCg -3'
miRNA:   3'- -GAGCGUGGga----AGcUGGUCa-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 9536 0.74 0.500488
Target:  5'- aCUCGUugCCUUUGucgcucgcaGCCGGUG-GCGGCu -3'
miRNA:   3'- -GAGCGugGGAAGC---------UGGUCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 9929 0.66 0.901187
Target:  5'- uCUCGCGCUaggUUCGAagCAGagACGcCGGCg -3'
miRNA:   3'- -GAGCGUGGg--AAGCUg-GUCa-UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 11969 0.66 0.894815
Target:  5'- gUCGCGCCaugUCuuGCCGc-GCGCGGCa -3'
miRNA:   3'- gAGCGUGGga-AGc-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 12776 0.69 0.775465
Target:  5'- -aCGCAgCCgcaCGACCGcUAgGCGGCa -3'
miRNA:   3'- gaGCGUgGGaa-GCUGGUcAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 17855 0.66 0.901187
Target:  5'- -gCGCGCUgUUCGACCGcGUGagcaauCGGCg -3'
miRNA:   3'- gaGCGUGGgAAGCUGGU-CAUgc----GCCG- -5'
24484 3' -56.5 NC_005264.1 + 18426 0.66 0.924401
Target:  5'- -gCGCGCCCUcUCGcUCGGcGCGgGGUc -3'
miRNA:   3'- gaGCGUGGGA-AGCuGGUCaUGCgCCG- -5'
24484 3' -56.5 NC_005264.1 + 20566 0.7 0.698801
Target:  5'- aUCGCGCUCU---GCCAGcGCGCGGg -3'
miRNA:   3'- gAGCGUGGGAagcUGGUCaUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 22192 0.66 0.901187
Target:  5'- uUCGUAUCCaucugUGGC--GUGCGCGGCa -3'
miRNA:   3'- gAGCGUGGGaa---GCUGguCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 23942 0.67 0.881408
Target:  5'- gUCGCGCCgc-CGAUgGGUAUGUGGg -3'
miRNA:   3'- gAGCGUGGgaaGCUGgUCAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 24361 0.66 0.913253
Target:  5'- -cCGcCGCUCUggcaUGACCGGcuuCGCGGCu -3'
miRNA:   3'- gaGC-GUGGGAa---GCUGGUCau-GCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.