miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 26361 0.66 0.901187
Target:  5'- -gUGCGCCg--CGGCaGGcUGCGCGGCg -3'
miRNA:   3'- gaGCGUGGgaaGCUGgUC-AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 27665 0.71 0.668917
Target:  5'- --gGCGCUCg--GACCgaGGUACGCGGCu -3'
miRNA:   3'- gagCGUGGGaagCUGG--UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 28140 0.67 0.852063
Target:  5'- -cUGCGCUUugaUUCG-CCAGUGCggGCGGCu -3'
miRNA:   3'- gaGCGUGGG---AAGCuGGUCAUG--CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 29127 0.76 0.410169
Target:  5'- gUCGUGCCagaggcaGcACCAGUGCGCGGCg -3'
miRNA:   3'- gAGCGUGGgaag---C-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 30086 0.68 0.820484
Target:  5'- -cCGCGCCCggacagaaucgcgagUCGAgaugCGGgcgGCGCGGCa -3'
miRNA:   3'- gaGCGUGGGa--------------AGCUg---GUCa--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 30484 0.68 0.811103
Target:  5'- cCUCGCGCCCcUCuccuCCuGcuccGCGCGGCc -3'
miRNA:   3'- -GAGCGUGGGaAGcu--GGuCa---UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 30528 0.67 0.874381
Target:  5'- uCUCGCGCagUUUGGCCGac-CGCGGUg -3'
miRNA:   3'- -GAGCGUGggAAGCUGGUcauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 32416 0.7 0.741681
Target:  5'- aUCG-GCUCUUCcaaguaaauucuacgGaACCGGUACGCGGCg -3'
miRNA:   3'- gAGCgUGGGAAG---------------C-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 33608 0.74 0.491038
Target:  5'- gCUUGcCGCCgCUaaaguUCGGCCAGaUugGCGGCg -3'
miRNA:   3'- -GAGC-GUGG-GA-----AGCUGGUC-AugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 37358 0.67 0.877217
Target:  5'- -cCGCGCucgaaaaagagcgagCCUcCGAgCAGgGCGCGGCa -3'
miRNA:   3'- gaGCGUG---------------GGAaGCUgGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 37662 0.66 0.918942
Target:  5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3'
miRNA:   3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 39031 0.66 0.901187
Target:  5'- uUCGCcaacgACCCagUCGgacugGCCgAGUucGCGCGGCg -3'
miRNA:   3'- gAGCG-----UGGGa-AGC-----UGG-UCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 39636 0.66 0.924401
Target:  5'- cCUCGgACCCUcCGcuuccccacACCGcggcGUGgGCGGCa -3'
miRNA:   3'- -GAGCgUGGGAaGC---------UGGU----CAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 40197 0.7 0.737846
Target:  5'- -gCGCGCCCgcccucgCGGCCccc-CGCGGCg -3'
miRNA:   3'- gaGCGUGGGaa-----GCUGGucauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 40942 0.66 0.924401
Target:  5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3'
miRNA:   3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 41707 0.7 0.728196
Target:  5'- gCUCGUAgCCCUcuacaucuucUCGcGCCAGgcgGCaGCGGCg -3'
miRNA:   3'- -GAGCGU-GGGA----------AGC-UGGUCa--UG-CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 42007 0.67 0.874381
Target:  5'- uUCGUGCUCgUCGGCCAcg--GCGGCa -3'
miRNA:   3'- gAGCGUGGGaAGCUGGUcaugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 43922 0.69 0.775465
Target:  5'- gUCGC-CUCgacgUCGaggGCCaAGUACGCGGUg -3'
miRNA:   3'- gAGCGuGGGa---AGC---UGG-UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 44713 0.66 0.918942
Target:  5'- -aUGUACCCcacUCGGCC--UACGCGGa -3'
miRNA:   3'- gaGCGUGGGa--AGCUGGucAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 46406 0.66 0.913253
Target:  5'- gUCGC-CCCcgCGGCCAG-ACGCccccaGCg -3'
miRNA:   3'- gAGCGuGGGaaGCUGGUCaUGCGc----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.