miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 46437 0.7 0.717489
Target:  5'- -cUGCGCUCgacgUCGGCCuGcggcuuuUGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGa---AGCUGGuC-------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 47196 1.13 0.001777
Target:  5'- aCUCGCACCCUUCGACCAGUACGCGGCg -3'
miRNA:   3'- -GAGCGUGGGAAGCUGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 49159 0.66 0.907334
Target:  5'- cCUUGCACCC--CGACCAucACGUaGCu -3'
miRNA:   3'- -GAGCGUGGGaaGCUGGUcaUGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 49339 0.67 0.867144
Target:  5'- uUCGCGC---UCGGCCcggaGGaACGCGGCa -3'
miRNA:   3'- gAGCGUGggaAGCUGG----UCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 49588 0.67 0.874381
Target:  5'- -gCGCACgCCgccggCGACCAGgacgACGgGGg -3'
miRNA:   3'- gaGCGUG-GGaa---GCUGGUCa---UGCgCCg -5'
24484 3' -56.5 NC_005264.1 + 52513 0.67 0.888221
Target:  5'- aCUUGCugCUggauUUCGugCGccGCGUGGCa -3'
miRNA:   3'- -GAGCGugGG----AAGCugGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 56113 0.67 0.867144
Target:  5'- -cCGCACCauccuugUCGACCAcUAgGCGcGCg -3'
miRNA:   3'- gaGCGUGGga-----AGCUGGUcAUgCGC-CG- -5'
24484 3' -56.5 NC_005264.1 + 58862 0.68 0.819639
Target:  5'- -aCGguUUCUUCGGCCguagGGUGCGCaGCg -3'
miRNA:   3'- gaGCguGGGAAGCUGG----UCAUGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 63821 0.69 0.802409
Target:  5'- -cCGCGCgC-UCGACCAGcucuaguaucgGCGCGGUc -3'
miRNA:   3'- gaGCGUGgGaAGCUGGUCa----------UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 65170 0.7 0.728196
Target:  5'- --gGCGCCCUcUCuGGCCAuGgcCGCGGCc -3'
miRNA:   3'- gagCGUGGGA-AG-CUGGU-CauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 65799 0.69 0.756869
Target:  5'- -aUGCGCUUaUCGACU--UGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGaAGCUGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 66524 0.66 0.894815
Target:  5'- -gCGUGCCCUgacgaCGACCGcGUugcggGCGuCGGCg -3'
miRNA:   3'- gaGCGUGGGAa----GCUGGU-CA-----UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 67281 0.71 0.678919
Target:  5'- gUCGCGCUagcgcgucggCUUCGAagGGUAuCGCGGCg -3'
miRNA:   3'- gAGCGUGG----------GAAGCUggUCAU-GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 68468 0.67 0.8862
Target:  5'- -aCGaCACCaCUUCG-UCGGUgagguuuagaucgaACGCGGCg -3'
miRNA:   3'- gaGC-GUGG-GAAGCuGGUCA--------------UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 68704 0.69 0.793566
Target:  5'- aCUCGCAgUCCauuaGGCCAGUucugaGCGCGGg -3'
miRNA:   3'- -GAGCGU-GGGaag-CUGGUCA-----UGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 68980 0.66 0.907334
Target:  5'- gCUCGCcaGCUUagCgGGCCAGUGgccCGCGGCc -3'
miRNA:   3'- -GAGCG--UGGGaaG-CUGGUCAU---GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 69843 0.74 0.500488
Target:  5'- -cUGCcCCCgcuaCGGCCGGUGCuGCGGCg -3'
miRNA:   3'- gaGCGuGGGaa--GCUGGUCAUG-CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 71299 0.73 0.565619
Target:  5'- -cCGCGCCCgauaugCGcgagcaugaacuugGCgAGUGCGCGGCa -3'
miRNA:   3'- gaGCGUGGGaa----GC--------------UGgUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 72206 0.67 0.872232
Target:  5'- -gCGCGCCCUUCGGgguuGUGCGUuuaugucgagccguGGCa -3'
miRNA:   3'- gaGCGUGGGAAGCUggu-CAUGCG--------------CCG- -5'
24484 3' -56.5 NC_005264.1 + 73050 0.67 0.874381
Target:  5'- --aGCGCCggcgguaugCGGCCAGagACGUGGCg -3'
miRNA:   3'- gagCGUGGgaa------GCUGGUCa-UGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.