miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 159969 0.66 0.924401
Target:  5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3'
miRNA:   3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 159224 0.7 0.737846
Target:  5'- -gCGCGCCCgcccucgCGGCCccc-CGCGGCg -3'
miRNA:   3'- gaGCGUGGGaa-----GCUGGucauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 158663 0.66 0.918942
Target:  5'- cCUCGgACCCUcCGcuucccacACCGcggcGUGgGCGGCa -3'
miRNA:   3'- -GAGCgUGGGAaGC--------UGGU----CAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 158058 0.66 0.901187
Target:  5'- uUCGCcaacgACCCagUCGgacugGCCgAGUucGCGCGGCg -3'
miRNA:   3'- gAGCG-----UGGGa-AGC-----UGG-UCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 156688 0.66 0.918942
Target:  5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3'
miRNA:   3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 155929 0.67 0.858191
Target:  5'- aUCGCGCCCacggaaagccgCGcGCUGGgacUGCGCGGCu -3'
miRNA:   3'- gAGCGUGGGaa---------GC-UGGUC---AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 149511 0.68 0.811103
Target:  5'- cCUCGCGCCCcUCuccuCCuGcuccGCGCGGCc -3'
miRNA:   3'- -GAGCGUGGGaAGcu--GGuCa---UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 146878 0.68 0.811103
Target:  5'- uUCGCACgUUUCugGACCGGUG-GCGGa -3'
miRNA:   3'- gAGCGUGgGAAG--CUGGUCAUgCGCCg -5'
24484 3' -56.5 NC_005264.1 + 146368 0.66 0.907334
Target:  5'- aCUCGuCGCCCcccagcgcuggUUCGACCAcGUucacaccCGCGGg -3'
miRNA:   3'- -GAGC-GUGGG-----------AAGCUGGU-CAu------GCGCCg -5'
24484 3' -56.5 NC_005264.1 + 145965 0.67 0.851288
Target:  5'- -cUGCGaCCUUCG-CCGGcgcgaauacgaacUGCGCGGCg -3'
miRNA:   3'- gaGCGUgGGAAGCuGGUC-------------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 144265 0.72 0.588527
Target:  5'- gCUCGCugCCUUgGGCCGGcggAUGCcGCu -3'
miRNA:   3'- -GAGCGugGGAAgCUGGUCa--UGCGcCG- -5'
24484 3' -56.5 NC_005264.1 + 144179 0.72 0.598543
Target:  5'- aUCGCACCaugUGACCucauuagcauacGGUGgGCGGCa -3'
miRNA:   3'- gAGCGUGGgaaGCUGG------------UCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 143412 0.67 0.867144
Target:  5'- -cCGCGCCCcgCGGCCAc-ACcCGGCg -3'
miRNA:   3'- gaGCGUGGGaaGCUGGUcaUGcGCCG- -5'
24484 3' -56.5 NC_005264.1 + 142951 0.67 0.888221
Target:  5'- --aGCACCCgaaaUGGCUA--GCGCGGCc -3'
miRNA:   3'- gagCGUGGGaa--GCUGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 142888 0.66 0.894815
Target:  5'- -cCGCGCCUUUCu-CCAGU-CaCGGCg -3'
miRNA:   3'- gaGCGUGGGAAGcuGGUCAuGcGCCG- -5'
24484 3' -56.5 NC_005264.1 + 139960 0.69 0.769935
Target:  5'- aUCGUGCCCgaaccaggggucuauUUCGAUaGGUucGCGCGGCc -3'
miRNA:   3'- gAGCGUGGG---------------AAGCUGgUCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 137925 0.66 0.89286
Target:  5'- uCUUGUcCCCUUUGgugguGCCGGUAucguugcgcgacuuCGCGGCc -3'
miRNA:   3'- -GAGCGuGGGAAGC-----UGGUCAU--------------GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 133894 0.66 0.907334
Target:  5'- -gCGUucACCCa-CGGCUcGUACGCGGUa -3'
miRNA:   3'- gaGCG--UGGGaaGCUGGuCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 132862 0.72 0.638773
Target:  5'- -aCGUugCCagCGGCCAGggACGCGGa -3'
miRNA:   3'- gaGCGugGGaaGCUGGUCa-UGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 131802 0.69 0.775465
Target:  5'- -aCGCAgCCgcaCGACCGcUAgGCGGCa -3'
miRNA:   3'- gaGCGUgGGaa-GCUGGUcAUgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.