miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 131661 0.67 0.859703
Target:  5'- --gGUGCCCgccgccaGACC-GUugGCGGCa -3'
miRNA:   3'- gagCGUGGGaag----CUGGuCAugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 130995 0.7 0.728196
Target:  5'- gUCGCGCCCaugUCuuGCCGc-GCGCGGCa -3'
miRNA:   3'- gAGCGUGGGa--AGc-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 130067 0.67 0.867144
Target:  5'- gUCGCugCCguggCGAUgauucauaCAGUAgGCGGUc -3'
miRNA:   3'- gAGCGugGGaa--GCUG--------GUCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 129587 0.66 0.907334
Target:  5'- -gCGCGCUCUgcaGGCgCuGcgGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGAag-CUG-GuCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128955 0.66 0.901187
Target:  5'- uCUCGCGCUaggUUCGAagCAGagACGcCGGCg -3'
miRNA:   3'- -GAGCGUGGg--AAGCUg-GUCa-UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 128758 0.79 0.28873
Target:  5'- -aCGUGgaagUCCUUCGcGCCAGUGCGCGGCu -3'
miRNA:   3'- gaGCGU----GGGAAGC-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128720 0.71 0.668917
Target:  5'- gCUCGCGCCUcgacgcuguUUCGGCCGcugagccauuGUGCccgccGCGGCa -3'
miRNA:   3'- -GAGCGUGGG---------AAGCUGGU----------CAUG-----CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128513 0.66 0.924401
Target:  5'- cCUCGCGUCagcgagUCaGCCAGcgucagGCGCGGCg -3'
miRNA:   3'- -GAGCGUGGga----AGcUGGUCa-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 125238 0.68 0.844229
Target:  5'- -aCGCGUCCUUUGACCccccgcCGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAGCUGGucau--GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 124077 0.66 0.918942
Target:  5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 123182 0.66 0.913253
Target:  5'- uCUCGCAgaguuguaCUUgGACgAGgccGCGCGGCa -3'
miRNA:   3'- -GAGCGUgg------GAAgCUGgUCa--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 122801 0.68 0.82801
Target:  5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3'
miRNA:   3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 122544 0.69 0.756869
Target:  5'- cCUCGCcguccGCCUcgUCGaACCGcgACGCGGCg -3'
miRNA:   3'- -GAGCG-----UGGGa-AGC-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 121878 0.79 0.261308
Target:  5'- gCUCGCGCCgucgcccgcugcggCUgcgaUCGACCGGgGCGCGGCg -3'
miRNA:   3'- -GAGCGUGG--------------GA----AGCUGGUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 120950 0.66 0.901187
Target:  5'- aUCcCAUCCUcCGGCaagagucuGUGCGCGGCc -3'
miRNA:   3'- gAGcGUGGGAaGCUGgu------CAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 120468 0.66 0.894815
Target:  5'- gUCGC-CUCgaagaUCGcAUCGGUGCGCGGa -3'
miRNA:   3'- gAGCGuGGGa----AGC-UGGUCAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 119454 0.66 0.913832
Target:  5'- uUCGCGCCCcucugcccuagcgucUCGuACCuaUGCGCGGUc -3'
miRNA:   3'- gAGCGUGGGa--------------AGC-UGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 118184 0.69 0.784582
Target:  5'- gCUCGUcgaACUUggCGcACCAGUcuaagGCGCGGCg -3'
miRNA:   3'- -GAGCG---UGGGaaGC-UGGUCA-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 116804 0.67 0.888221
Target:  5'- aUUGCGCCCUggcaUCGGCCA--GCG-GGUu -3'
miRNA:   3'- gAGCGUGGGA----AGCUGGUcaUGCgCCG- -5'
24484 3' -56.5 NC_005264.1 + 113036 0.69 0.775465
Target:  5'- -cCGCGgCCg-CGACUGGgcCGCGGCg -3'
miRNA:   3'- gaGCGUgGGaaGCUGGUCauGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.