miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 63821 0.69 0.802409
Target:  5'- -cCGCGCgC-UCGACCAGcucuaguaucgGCGCGGUc -3'
miRNA:   3'- gaGCGUGgGaAGCUGGUCa----------UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 65170 0.7 0.728196
Target:  5'- --gGCGCCCUcUCuGGCCAuGgcCGCGGCc -3'
miRNA:   3'- gagCGUGGGA-AG-CUGGU-CauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 130995 0.7 0.728196
Target:  5'- gUCGCGCCCaugUCuuGCCGc-GCGCGGCa -3'
miRNA:   3'- gAGCGUGGGa--AGc-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 159224 0.7 0.737846
Target:  5'- -gCGCGCCCgcccucgCGGCCccc-CGCGGCg -3'
miRNA:   3'- gaGCGUGGGaa-----GCUGGucauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 32416 0.7 0.741681
Target:  5'- aUCG-GCUCUUCcaaguaaauucuacgGaACCGGUACGCGGCg -3'
miRNA:   3'- gAGCgUGGGAAG---------------C-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 122544 0.69 0.756869
Target:  5'- cCUCGCcguccGCCUcgUCGaACCGcgACGCGGCg -3'
miRNA:   3'- -GAGCG-----UGGGa-AGC-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 113036 0.69 0.775465
Target:  5'- -cCGCGgCCg-CGACUGGgcCGCGGCg -3'
miRNA:   3'- gaGCGUgGGaaGCUGGUCauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 131802 0.69 0.775465
Target:  5'- -aCGCAgCCgcaCGACCGcUAgGCGGCa -3'
miRNA:   3'- gaGCGUgGGaa-GCUGGUcAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 118184 0.69 0.784582
Target:  5'- gCUCGUcgaACUUggCGcACCAGUcuaagGCGCGGCg -3'
miRNA:   3'- -GAGCG---UGGGaaGC-UGGUCA-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 41707 0.7 0.728196
Target:  5'- gCUCGUAgCCCUcuacaucuucUCGcGCCAGgcgGCaGCGGCg -3'
miRNA:   3'- -GAGCGU-GGGA----------AGC-UGGUCa--UG-CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 46437 0.7 0.717489
Target:  5'- -cUGCGCUCgacgUCGGCCuGcggcuuuUGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGa---AGCUGGuC-------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 111905 0.7 0.698801
Target:  5'- -aCGCGCgauuCCU-CGACCAGUuCGUGGUg -3'
miRNA:   3'- gaGCGUG----GGAaGCUGGUCAuGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 33608 0.74 0.491038
Target:  5'- gCUUGcCGCCgCUaaaguUCGGCCAGaUugGCGGCg -3'
miRNA:   3'- -GAGC-GUGG-GA-----AGCUGGUC-AugCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 9536 0.74 0.500488
Target:  5'- aCUCGUugCCUUUGucgcucgcaGCCGGUG-GCGGCu -3'
miRNA:   3'- -GAGCGugGGAAGC---------UGGUCAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 71299 0.73 0.565619
Target:  5'- -cCGCGCCCgauaugCGcgagcaugaacuugGCgAGUGCGCGGCa -3'
miRNA:   3'- gaGCGUGGGaa----GC--------------UGgUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 75204 0.72 0.636759
Target:  5'- -cCGCGCCCcacgcggcugcaUCGGCCc-UGCGCGGCg -3'
miRNA:   3'- gaGCGUGGGa-----------AGCUGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 132862 0.72 0.638773
Target:  5'- -aCGUugCCagCGGCCAGggACGCGGa -3'
miRNA:   3'- gaGCGugGGaaGCUGGUCa-UGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 86754 0.71 0.658887
Target:  5'- uUCGCGCCCguagagccgUCGACgCu---CGCGGCg -3'
miRNA:   3'- gAGCGUGGGa--------AGCUG-GucauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 128720 0.71 0.668917
Target:  5'- gCUCGCGCCUcgacgcuguUUCGGCCGcugagccauuGUGCccgccGCGGCa -3'
miRNA:   3'- -GAGCGUGGG---------AAGCUGGU----------CAUG-----CGCCG- -5'
24484 3' -56.5 NC_005264.1 + 67281 0.71 0.678919
Target:  5'- gUCGCGCUagcgcgucggCUUCGAagGGUAuCGCGGCg -3'
miRNA:   3'- gAGCGUGG----------GAAGCUggUCAU-GCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.