miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 65170 0.7 0.728196
Target:  5'- --gGCGCCCUcUCuGGCCAuGgcCGCGGCc -3'
miRNA:   3'- gagCGUGGGA-AG-CUGGU-CauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 130995 0.7 0.728196
Target:  5'- gUCGCGCCCaugUCuuGCCGc-GCGCGGCa -3'
miRNA:   3'- gAGCGUGGGa--AGc-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 122801 0.68 0.82801
Target:  5'- -gCGgGCCCUuggUCGACCGccgccgaucUGCGUGGCg -3'
miRNA:   3'- gaGCgUGGGA---AGCUGGUc--------AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 30086 0.68 0.820484
Target:  5'- -cCGCGCCCggacagaaucgcgagUCGAgaugCGGgcgGCGCGGCa -3'
miRNA:   3'- gaGCGUGGGa--------------AGCUg---GUCa--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 106717 0.68 0.819639
Target:  5'- aCUCGCGCgCCUaguggUCGACaaggauGGUGCGgGGg -3'
miRNA:   3'- -GAGCGUG-GGA-----AGCUGg-----UCAUGCgCCg -5'
24484 3' -56.5 NC_005264.1 + 149511 0.68 0.811103
Target:  5'- cCUCGCGCCCcUCuccuCCuGcuccGCGCGGCc -3'
miRNA:   3'- -GAGCGUGGGaAGcu--GGuCa---UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 63821 0.69 0.802409
Target:  5'- -cCGCGCgC-UCGACCAGcucuaguaucgGCGCGGUc -3'
miRNA:   3'- gaGCGUGgGaAGCUGGUCa----------UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 118184 0.69 0.784582
Target:  5'- gCUCGUcgaACUUggCGcACCAGUcuaagGCGCGGCg -3'
miRNA:   3'- -GAGCG---UGGGaaGC-UGGUCA-----UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 131802 0.69 0.775465
Target:  5'- -aCGCAgCCgcaCGACCGcUAgGCGGCa -3'
miRNA:   3'- gaGCGUgGGaa-GCUGGUcAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 113036 0.69 0.775465
Target:  5'- -cCGCGgCCg-CGACUGGgcCGCGGCg -3'
miRNA:   3'- gaGCGUgGGaaGCUGGUCauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 122544 0.69 0.756869
Target:  5'- cCUCGCcguccGCCUcgUCGaACCGcgACGCGGCg -3'
miRNA:   3'- -GAGCG-----UGGGa-AGC-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 32416 0.7 0.741681
Target:  5'- aUCG-GCUCUUCcaaguaaauucuacgGaACCGGUACGCGGCg -3'
miRNA:   3'- gAGCgUGGGAAG---------------C-UGGUCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 159224 0.7 0.737846
Target:  5'- -gCGCGCCCgcccucgCGGCCccc-CGCGGCg -3'
miRNA:   3'- gaGCGUGGGaa-----GCUGGucauGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 427 0.66 0.913832
Target:  5'- uUCGCGCCCcucugcccuagcgucUCGuACCuaUGCGCGGUc -3'
miRNA:   3'- gAGCGUGGGa--------------AGC-UGGucAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 5050 0.66 0.918942
Target:  5'- -aCGUACCCUUCuGGCaggGGUcgcaAgGCGGCc -3'
miRNA:   3'- gaGCGUGGGAAG-CUGg--UCA----UgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 37662 0.66 0.918942
Target:  5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3'
miRNA:   3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 44713 0.66 0.918942
Target:  5'- -aUGUACCCcacUCGGCC--UACGCGGa -3'
miRNA:   3'- gaGCGUGGGa--AGCUGGucAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 39636 0.66 0.924401
Target:  5'- cCUCGgACCCUcCGcuuccccacACCGcggcGUGgGCGGCa -3'
miRNA:   3'- -GAGCgUGGGAaGC---------UGGU----CAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 40942 0.66 0.924401
Target:  5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3'
miRNA:   3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 47196 1.13 0.001777
Target:  5'- aCUCGCACCCUUCGACCAGUACGCGGCg -3'
miRNA:   3'- -GAGCGUGGGAAGCUGGUCAUGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.