miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 3' -56.5 NC_005264.1 + 120468 0.66 0.894815
Target:  5'- gUCGC-CUCgaagaUCGcAUCGGUGCGCGGa -3'
miRNA:   3'- gAGCGuGGGa----AGC-UGGUCAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 17855 0.66 0.901187
Target:  5'- -gCGCGCUgUUCGACCGcGUGagcaauCGGCg -3'
miRNA:   3'- gaGCGUGGgAAGCUGGU-CAUgc----GCCG- -5'
24484 3' -56.5 NC_005264.1 + 146368 0.66 0.907334
Target:  5'- aCUCGuCGCCCcccagcgcuggUUCGACCAcGUucacaccCGCGGg -3'
miRNA:   3'- -GAGC-GUGGG-----------AAGCUGGU-CAu------GCGCCg -5'
24484 3' -56.5 NC_005264.1 + 44713 0.66 0.918942
Target:  5'- -aUGUACCCcacUCGGCC--UACGCGGa -3'
miRNA:   3'- gaGCGUGGGa--AGCUGGucAUGCGCCg -5'
24484 3' -56.5 NC_005264.1 + 84854 0.67 0.867144
Target:  5'- gCUCGguauCGCCCgcu--CCGGUacGCGCGGCg -3'
miRNA:   3'- -GAGC----GUGGGaagcuGGUCA--UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 96222 0.67 0.888221
Target:  5'- cCUCGgGCCgCgaCGgcGCCGGcaACGCGGCg -3'
miRNA:   3'- -GAGCgUGG-GaaGC--UGGUCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 26361 0.66 0.901187
Target:  5'- -gUGCGCCg--CGGCaGGcUGCGCGGCg -3'
miRNA:   3'- gaGCGUGGgaaGCUGgUC-AUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 39636 0.66 0.924401
Target:  5'- cCUCGgACCCUcCGcuuccccacACCGcggcGUGgGCGGCa -3'
miRNA:   3'- -GAGCgUGGGAaGC---------UGGU----CAUgCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 116804 0.67 0.888221
Target:  5'- aUUGCGCCCUggcaUCGGCCA--GCG-GGUu -3'
miRNA:   3'- gAGCGUGGGA----AGCUGGUcaUGCgCCG- -5'
24484 3' -56.5 NC_005264.1 + 40942 0.66 0.924401
Target:  5'- -cCGCGCCCcggUCGAUcgcagccgCAGcggGCGaCGGCg -3'
miRNA:   3'- gaGCGUGGGa--AGCUG--------GUCa--UGC-GCCG- -5'
24484 3' -56.5 NC_005264.1 + 22192 0.66 0.901187
Target:  5'- uUCGUAUCCaucugUGGC--GUGCGCGGCa -3'
miRNA:   3'- gAGCGUGGGaa---GCUGguCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 11969 0.66 0.894815
Target:  5'- gUCGCGCCaugUCuuGCCGc-GCGCGGCa -3'
miRNA:   3'- gAGCGUGGga-AGc-UGGUcaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 68980 0.66 0.907334
Target:  5'- gCUCGCcaGCUUagCgGGCCAGUGgccCGCGGCc -3'
miRNA:   3'- -GAGCG--UGGGaaG-CUGGUCAU---GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 100986 0.66 0.907334
Target:  5'- -gUGCGuuUUUCGccaacaACCcGUACGCGGCg -3'
miRNA:   3'- gaGCGUggGAAGC------UGGuCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 24361 0.66 0.913253
Target:  5'- -cCGcCGCUCUggcaUGACCGGcuuCGCGGCu -3'
miRNA:   3'- gaGC-GUGGGAa---GCUGGUCau-GCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 37662 0.66 0.918942
Target:  5'- -gUGCACgCgaugcgCGACgGGcGCGCGGCc -3'
miRNA:   3'- gaGCGUGgGaa----GCUGgUCaUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 106718 0.67 0.859703
Target:  5'- gCUCGCcguuACCUgcaggUUGAUCuugcgaGGUAUGCGGCa -3'
miRNA:   3'- -GAGCG----UGGGa----AGCUGG------UCAUGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 56113 0.67 0.867144
Target:  5'- -cCGCACCauccuugUCGACCAcUAgGCGcGCg -3'
miRNA:   3'- gaGCGUGGga-----AGCUGGUcAUgCGC-CG- -5'
24484 3' -56.5 NC_005264.1 + 79867 0.67 0.881408
Target:  5'- -cCGUA-CCUUCGuCaCGGggGCGCGGCg -3'
miRNA:   3'- gaGCGUgGGAAGCuG-GUCa-UGCGCCG- -5'
24484 3' -56.5 NC_005264.1 + 52513 0.67 0.888221
Target:  5'- aCUUGCugCUggauUUCGugCGccGCGUGGCa -3'
miRNA:   3'- -GAGCGugGG----AAGCugGUcaUGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.