miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 5' -55.4 NC_005264.1 + 40286 0.66 0.932704
Target:  5'- -cGCCGcgucGCGgUUCGaCGAGGCgGACGg -3'
miRNA:   3'- gaCGGC----CGUgAAGUaGCUCCGgUUGU- -5'
24484 5' -55.4 NC_005264.1 + 159313 0.66 0.932704
Target:  5'- -cGCCGcgucGCGgUUCGaCGAGGCgGACGg -3'
miRNA:   3'- gaCGGC----CGUgAAGUaGCUCCGgUUGU- -5'
24484 5' -55.4 NC_005264.1 + 124409 0.66 0.927494
Target:  5'- --aCCGGCGCUcgAUUgcuugccaGGGGCCAGCAg -3'
miRNA:   3'- gacGGCCGUGAagUAG--------CUCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 137250 0.66 0.927494
Target:  5'- -gGcCCGGCGCUauUCAUUu-GGCCAugGg -3'
miRNA:   3'- gaC-GGCCGUGA--AGUAGcuCCGGUugU- -5'
24484 5' -55.4 NC_005264.1 + 51677 0.66 0.927494
Target:  5'- -aGCCGGCAgcUCAggaGGGGUCGugGu -3'
miRNA:   3'- gaCGGCCGUgaAGUag-CUCCGGUugU- -5'
24484 5' -55.4 NC_005264.1 + 20158 0.66 0.927494
Target:  5'- -cGCCGGCGCccaagAUCGcGGCaCGACGu -3'
miRNA:   3'- gaCGGCCGUGaag--UAGCuCCG-GUUGU- -5'
24484 5' -55.4 NC_005264.1 + 5382 0.66 0.927494
Target:  5'- --aCCGGCGCUcgAUUgcuugccaGGGGCCAGCAg -3'
miRNA:   3'- gacGGCCGUGAagUAG--------CUCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 123042 0.66 0.922042
Target:  5'- gUGCCGcGCAUcgCcaacgagacgAUCGAGGCCAucuACGg -3'
miRNA:   3'- gACGGC-CGUGaaG----------UAGCUCCGGU---UGU- -5'
24484 5' -55.4 NC_005264.1 + 60538 0.66 0.910412
Target:  5'- aUGCCGGC-CgaggugUCGUCGAGGgucgucCUGACGu -3'
miRNA:   3'- gACGGCCGuGa-----AGUAGCUCC------GGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 73468 0.66 0.910412
Target:  5'- -aGCCGGCGCUUgcCGUCaggaAGGCCcgggagauAGCAa -3'
miRNA:   3'- gaCGGCCGUGAA--GUAGc---UCCGG--------UUGU- -5'
24484 5' -55.4 NC_005264.1 + 91059 0.66 0.910412
Target:  5'- -aGCCgaGGCGCUUCugcaaCGGcGCCAGCAg -3'
miRNA:   3'- gaCGG--CCGUGAAGua---GCUcCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 76624 0.66 0.908585
Target:  5'- -gGCCGcccacgaGCACgcagagaagacCAUCGAGGCCGAUg -3'
miRNA:   3'- gaCGGC-------CGUGaa---------GUAGCUCCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 119265 0.67 0.897825
Target:  5'- gUGCCuGGCGCcaCAgCGAGGCgGGCc -3'
miRNA:   3'- gACGG-CCGUGaaGUaGCUCCGgUUGu -5'
24484 5' -55.4 NC_005264.1 + 238 0.67 0.897825
Target:  5'- gUGCCuGGCGCcaCAgCGAGGCgGGCc -3'
miRNA:   3'- gACGG-CCGUGaaGUaGCUCCGgUUGu -5'
24484 5' -55.4 NC_005264.1 + 144660 0.67 0.897825
Target:  5'- -aGCCGGCAUUcuugCGcCGAGcgucaGCCGACAa -3'
miRNA:   3'- gaCGGCCGUGAa---GUaGCUC-----CGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 12672 0.67 0.897825
Target:  5'- -gGCCGGCAgcaaUUUUAUCGuGGCCc--- -3'
miRNA:   3'- gaCGGCCGU----GAAGUAGCuCCGGuugu -5'
24484 5' -55.4 NC_005264.1 + 20236 0.67 0.891178
Target:  5'- -aGcCCGGCGuggcCaUCGUCGcGGCCGGCAu -3'
miRNA:   3'- gaC-GGCCGU----GaAGUAGCuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 114471 0.67 0.8905
Target:  5'- -cGCCucgacgcGGCACUgcgCAaCGAGGCCGcCAu -3'
miRNA:   3'- gaCGG-------CCGUGAa--GUaGCUCCGGUuGU- -5'
24484 5' -55.4 NC_005264.1 + 72319 0.67 0.8836
Target:  5'- -cGuuGGCGguuuggcCUUCGUCGAuGGCCGAg- -3'
miRNA:   3'- gaCggCCGU-------GAAGUAGCU-CCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 99584 0.67 0.877916
Target:  5'- -aGCCGGUGCggauucuggagggccUCAUCGAaaccggGGCCGACc -3'
miRNA:   3'- gaCGGCCGUGa--------------AGUAGCU------CCGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.