miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 5' -55.4 NC_005264.1 + 119168 0.67 0.877196
Target:  5'- -cGCCGGCACcaaagaacggUUCAgc--GGCCAACGc -3'
miRNA:   3'- gaCGGCCGUG----------AAGUagcuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 78499 0.67 0.877196
Target:  5'- -cGCCGGUGCacgCggUGAGGCCAGu- -3'
miRNA:   3'- gaCGGCCGUGaa-GuaGCUCCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 42141 0.67 0.877196
Target:  5'- -cGCCGGCuuugUCGgcgCGAGGCCu--- -3'
miRNA:   3'- gaCGGCCGuga-AGUa--GCUCCGGuugu -5'
24484 5' -55.4 NC_005264.1 + 23322 0.68 0.862327
Target:  5'- -gGCgGGcCACaaCAUCGcGGCCAGCGg -3'
miRNA:   3'- gaCGgCC-GUGaaGUAGCuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 55121 0.68 0.861561
Target:  5'- -aGCCggGGCACUcggacguUCAgauaaugcUCGAGGCCcGCAa -3'
miRNA:   3'- gaCGG--CCGUGA-------AGU--------AGCUCCGGuUGU- -5'
24484 5' -55.4 NC_005264.1 + 3004 0.68 0.846617
Target:  5'- -gGCCGGCGCUaaUCAUCcAGcGCCccccGCAg -3'
miRNA:   3'- gaCGGCCGUGA--AGUAGcUC-CGGu---UGU- -5'
24484 5' -55.4 NC_005264.1 + 122031 0.68 0.846617
Target:  5'- -gGCCGGCGCUaaUCAUCcAGcGCCccccGCAg -3'
miRNA:   3'- gaCGGCCGUGA--AGUAGcUC-CGGu---UGU- -5'
24484 5' -55.4 NC_005264.1 + 43864 0.68 0.84581
Target:  5'- -gGCCGGCAaagacguCUUCGUCGucGCCGu-- -3'
miRNA:   3'- gaCGGCCGU-------GAAGUAGCucCGGUugu -5'
24484 5' -55.4 NC_005264.1 + 8402 0.68 0.838462
Target:  5'- gCUGCCGGaGCUguugUUGUCGAGGUUGAUg -3'
miRNA:   3'- -GACGGCCgUGA----AGUAGCUCCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 127429 0.68 0.838462
Target:  5'- gCUGCCGGaGCUguugUUGUCGAGGUUGAUg -3'
miRNA:   3'- -GACGGCCgUGA----AGUAGCUCCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 48378 0.68 0.837636
Target:  5'- gUGCCgcgucgaGGCGCUcgacguUCGUCGAGG-CGACGg -3'
miRNA:   3'- gACGG-------CCGUGA------AGUAGCUCCgGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 1170 0.68 0.830117
Target:  5'- uCUGCCGGCGCgcgAUgGGGGUacgCAGCGg -3'
miRNA:   3'- -GACGGCCGUGaagUAgCUCCG---GUUGU- -5'
24484 5' -55.4 NC_005264.1 + 84780 0.68 0.830117
Target:  5'- uUGCCGGCuCUuggucgUCAuUCGAGGCagGGCAu -3'
miRNA:   3'- gACGGCCGuGA------AGU-AGCUCCGg-UUGU- -5'
24484 5' -55.4 NC_005264.1 + 120197 0.68 0.830117
Target:  5'- uCUGCCGGCGCgcgAUgGGGGUacgCAGCGg -3'
miRNA:   3'- -GACGGCCGUGaagUAgCUCCG---GUUGU- -5'
24484 5' -55.4 NC_005264.1 + 89923 0.69 0.804019
Target:  5'- --aCCGGCagGCUUCgacgcuGUCGAGGCCGAa- -3'
miRNA:   3'- gacGGCCG--UGAAG------UAGCUCCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 46436 0.69 0.794992
Target:  5'- cCUGCCGcGgGC-UCAgCGAGaGCCGACGa -3'
miRNA:   3'- -GACGGC-CgUGaAGUaGCUC-CGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 82839 0.69 0.785816
Target:  5'- gUGCCGcGCcuccuCUUCcgCGcGGCCGGCAu -3'
miRNA:   3'- gACGGC-CGu----GAAGuaGCuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 15737 0.7 0.767054
Target:  5'- -cGuuGGCACUuagCGUCG-GGCCAAa- -3'
miRNA:   3'- gaCggCCGUGAa--GUAGCuCCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 157325 0.7 0.767054
Target:  5'- -cGCCgcGGCugU-CAUC-AGGCCAACAa -3'
miRNA:   3'- gaCGG--CCGugAaGUAGcUCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 137619 0.7 0.757485
Target:  5'- uCUGCCGGCACUgcccuggcCAcCGuguGcGCCAACAc -3'
miRNA:   3'- -GACGGCCGUGAa-------GUaGCu--C-CGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.