miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 5' -55.4 NC_005264.1 + 66618 0.72 0.657168
Target:  5'- uUGCCGGCGC--CGUCGcGGCCcgaGGCAa -3'
miRNA:   3'- gACGGCCGUGaaGUAGCuCCGG---UUGU- -5'
24484 5' -55.4 NC_005264.1 + 119265 0.67 0.897825
Target:  5'- gUGCCuGGCGCcaCAgCGAGGCgGGCc -3'
miRNA:   3'- gACGG-CCGUGaaGUaGCUCCGgUUGu -5'
24484 5' -55.4 NC_005264.1 + 76624 0.66 0.908585
Target:  5'- -gGCCGcccacgaGCACgcagagaagacCAUCGAGGCCGAUg -3'
miRNA:   3'- gaCGGC-------CGUGaa---------GUAGCUCCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 91059 0.66 0.910412
Target:  5'- -aGCCgaGGCGCUUCugcaaCGGcGCCAGCAg -3'
miRNA:   3'- gaCGG--CCGUGAAGua---GCUcCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 60538 0.66 0.910412
Target:  5'- aUGCCGGC-CgaggugUCGUCGAGGgucgucCUGACGu -3'
miRNA:   3'- gACGGCCGuGa-----AGUAGCUCC------GGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 51677 0.66 0.927494
Target:  5'- -aGCCGGCAgcUCAggaGGGGUCGugGu -3'
miRNA:   3'- gaCGGCCGUgaAGUag-CUCCGGUugU- -5'
24484 5' -55.4 NC_005264.1 + 137250 0.66 0.927494
Target:  5'- -gGcCCGGCGCUauUCAUUu-GGCCAugGg -3'
miRNA:   3'- gaC-GGCCGUGA--AGUAGcuCCGGUugU- -5'
24484 5' -55.4 NC_005264.1 + 124409 0.66 0.927494
Target:  5'- --aCCGGCGCUcgAUUgcuugccaGGGGCCAGCAg -3'
miRNA:   3'- gacGGCCGUGAagUAG--------CUCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 159313 0.66 0.932704
Target:  5'- -cGCCGcgucGCGgUUCGaCGAGGCgGACGg -3'
miRNA:   3'- gaCGGC----CGUgAAGUaGCUCCGgUUGU- -5'
24484 5' -55.4 NC_005264.1 + 12672 0.67 0.897825
Target:  5'- -gGCCGGCAgcaaUUUUAUCGuGGCCc--- -3'
miRNA:   3'- gaCGGCCGU----GAAGUAGCuCCGGuugu -5'
24484 5' -55.4 NC_005264.1 + 42141 0.67 0.877196
Target:  5'- -cGCCGGCuuugUCGgcgCGAGGCCu--- -3'
miRNA:   3'- gaCGGCCGuga-AGUa--GCUCCGGuugu -5'
24484 5' -55.4 NC_005264.1 + 122031 0.68 0.846617
Target:  5'- -gGCCGGCGCUaaUCAUCcAGcGCCccccGCAg -3'
miRNA:   3'- gaCGGCCGUGA--AGUAGcUC-CGGu---UGU- -5'
24484 5' -55.4 NC_005264.1 + 161302 0.71 0.677682
Target:  5'- uUGCCGGCGCggUCAacgccgCGGGGCCccaaaaAACGg -3'
miRNA:   3'- gACGGCCGUGa-AGUa-----GCUCCGG------UUGU- -5'
24484 5' -55.4 NC_005264.1 + 2966 0.71 0.681768
Target:  5'- -cGCCGGCAUaguuccgaccacgaaUcCAUCGAGcGCCGACu -3'
miRNA:   3'- gaCGGCCGUG---------------AaGUAGCUC-CGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 137619 0.7 0.757485
Target:  5'- uCUGCCGGCACUgcccuggcCAcCGuguGcGCCAACAc -3'
miRNA:   3'- -GACGGCCGUGAa-------GUaGCu--C-CGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 82839 0.69 0.785816
Target:  5'- gUGCCGcGCcuccuCUUCcgCGcGGCCGGCAu -3'
miRNA:   3'- gACGGC-CGu----GAAGuaGCuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 120197 0.68 0.830117
Target:  5'- uCUGCCGGCGCgcgAUgGGGGUacgCAGCGg -3'
miRNA:   3'- -GACGGCCGUGaagUAgCUCCG---GUUGU- -5'
24484 5' -55.4 NC_005264.1 + 48378 0.68 0.837636
Target:  5'- gUGCCgcgucgaGGCGCUcgacguUCGUCGAGG-CGACGg -3'
miRNA:   3'- gACGG-------CCGUGA------AGUAGCUCCgGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 127429 0.68 0.838462
Target:  5'- gCUGCCGGaGCUguugUUGUCGAGGUUGAUg -3'
miRNA:   3'- -GACGGCCgUGA----AGUAGCUCCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 43864 0.68 0.84581
Target:  5'- -gGCCGGCAaagacguCUUCGUCGucGCCGu-- -3'
miRNA:   3'- gaCGGCCGU-------GAAGUAGCucCGGUugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.