miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24484 5' -55.4 NC_005264.1 + 20158 0.66 0.927494
Target:  5'- -cGCCGGCGCccaagAUCGcGGCaCGACGu -3'
miRNA:   3'- gaCGGCCGUGaag--UAGCuCCG-GUUGU- -5'
24484 5' -55.4 NC_005264.1 + 84780 0.68 0.830117
Target:  5'- uUGCCGGCuCUuggucgUCAuUCGAGGCagGGCAu -3'
miRNA:   3'- gACGGCCGuGA------AGU-AGCUCCGg-UUGU- -5'
24484 5' -55.4 NC_005264.1 + 89923 0.69 0.804019
Target:  5'- --aCCGGCagGCUUCgacgcuGUCGAGGCCGAa- -3'
miRNA:   3'- gacGGCCG--UGAAG------UAGCUCCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 47232 1.09 0.00306
Target:  5'- aCUGCCGGCACUUCAUCGAGGCCAACAa -3'
miRNA:   3'- -GACGGCCGUGAAGUAGCUCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 238 0.67 0.897825
Target:  5'- gUGCCuGGCGCcaCAgCGAGGCgGGCc -3'
miRNA:   3'- gACGG-CCGUGaaGUaGCUCCGgUUGu -5'
24484 5' -55.4 NC_005264.1 + 144660 0.67 0.897825
Target:  5'- -aGCCGGCAUUcuugCGcCGAGcgucaGCCGACAa -3'
miRNA:   3'- gaCGGCCGUGAa---GUaGCUC-----CGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 114471 0.67 0.8905
Target:  5'- -cGCCucgacgcGGCACUgcgCAaCGAGGCCGcCAu -3'
miRNA:   3'- gaCGG-------CCGUGAa--GUaGCUCCGGUuGU- -5'
24484 5' -55.4 NC_005264.1 + 72319 0.67 0.8836
Target:  5'- -cGuuGGCGguuuggcCUUCGUCGAuGGCCGAg- -3'
miRNA:   3'- gaCggCCGU-------GAAGUAGCU-CCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 78499 0.67 0.877196
Target:  5'- -cGCCGGUGCacgCggUGAGGCCAGu- -3'
miRNA:   3'- gaCGGCCGUGaa-GuaGCUCCGGUUgu -5'
24484 5' -55.4 NC_005264.1 + 8402 0.68 0.838462
Target:  5'- gCUGCCGGaGCUguugUUGUCGAGGUUGAUg -3'
miRNA:   3'- -GACGGCCgUGA----AGUAGCUCCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 23322 0.68 0.862327
Target:  5'- -gGCgGGcCACaaCAUCGcGGCCAGCGg -3'
miRNA:   3'- gaCGgCC-GUGaaGUAGCuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 119168 0.67 0.877196
Target:  5'- -cGCCGGCACcaaagaacggUUCAgc--GGCCAACGc -3'
miRNA:   3'- gaCGGCCGUG----------AAGUagcuCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 5382 0.66 0.927494
Target:  5'- --aCCGGCGCUcgAUUgcuugccaGGGGCCAGCAg -3'
miRNA:   3'- gacGGCCGUGAagUAG--------CUCCGGUUGU- -5'
24484 5' -55.4 NC_005264.1 + 55121 0.68 0.861561
Target:  5'- -aGCCggGGCACUcggacguUCAgauaaugcUCGAGGCCcGCAa -3'
miRNA:   3'- gaCGG--CCGUGA-------AGU--------AGCUCCGGuUGU- -5'
24484 5' -55.4 NC_005264.1 + 123042 0.66 0.922042
Target:  5'- gUGCCGcGCAUcgCcaacgagacgAUCGAGGCCAucuACGg -3'
miRNA:   3'- gACGGC-CGUGaaG----------UAGCUCCGGU---UGU- -5'
24484 5' -55.4 NC_005264.1 + 99584 0.67 0.877916
Target:  5'- -aGCCGGUGCggauucuggagggccUCAUCGAaaccggGGCCGACc -3'
miRNA:   3'- gaCGGCCGUGa--------------AGUAGCU------CCGGUUGu -5'
24484 5' -55.4 NC_005264.1 + 3004 0.68 0.846617
Target:  5'- -gGCCGGCGCUaaUCAUCcAGcGCCccccGCAg -3'
miRNA:   3'- gaCGGCCGUGA--AGUAGcUC-CGGu---UGU- -5'
24484 5' -55.4 NC_005264.1 + 1170 0.68 0.830117
Target:  5'- uCUGCCGGCGCgcgAUgGGGGUacgCAGCGg -3'
miRNA:   3'- -GACGGCCGUGaagUAgCUCCG---GUUGU- -5'
24484 5' -55.4 NC_005264.1 + 73468 0.66 0.910412
Target:  5'- -aGCCGGCGCUUgcCGUCaggaAGGCCcgggagauAGCAa -3'
miRNA:   3'- gaCGGCCGUGAA--GUAGc---UCCGG--------UUGU- -5'
24484 5' -55.4 NC_005264.1 + 20236 0.67 0.891178
Target:  5'- -aGcCCGGCGuggcCaUCGUCGcGGCCGGCAu -3'
miRNA:   3'- gaC-GGCCGU----GaAGUAGCuCCGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.