miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24485 3' -58.8 NC_005264.1 + 107160 0.66 0.834418
Target:  5'- -gGGCCUCGCUgaGGUCGuugauagauGAUCUGGCGa -3'
miRNA:   3'- gaCCGGGGUGA--CCAGCu--------CUGGGUUGC- -5'
24485 3' -58.8 NC_005264.1 + 146727 0.66 0.826272
Target:  5'- --uGCCCCAagcuuagGGUCGAacgagggcggcgGACCCGGCa -3'
miRNA:   3'- gacCGGGGUga-----CCAGCU------------CUGGGUUGc -5'
24485 3' -58.8 NC_005264.1 + 41016 0.66 0.826272
Target:  5'- -gGGCuCCCAggcagcGGUCGAGGgCCGACc -3'
miRNA:   3'- gaCCG-GGGUga----CCAGCUCUgGGUUGc -5'
24485 3' -58.8 NC_005264.1 + 160043 0.66 0.826272
Target:  5'- -gGGCuCCCAggcagcGGUCGAGGgCCGACc -3'
miRNA:   3'- gaCCG-GGGUga----CCAGCUCUgGGUUGc -5'
24485 3' -58.8 NC_005264.1 + 154357 0.66 0.826272
Target:  5'- -cGGCCCacucuGCUGcuUgGGGACCCAGCu -3'
miRNA:   3'- gaCCGGGg----UGACc-AgCUCUGGGUUGc -5'
24485 3' -58.8 NC_005264.1 + 75609 0.66 0.818798
Target:  5'- -cGGCCuCCAUgccuuucacguacacGGUCGGGAaCCCAgauGCGg -3'
miRNA:   3'- gaCCGG-GGUGa--------------CCAGCUCU-GGGU---UGC- -5'
24485 3' -58.8 NC_005264.1 + 100725 0.66 0.809487
Target:  5'- gUGGCUCUggagagggcGCUGGUCGAG-CUCGcCGa -3'
miRNA:   3'- gACCGGGG---------UGACCAGCUCuGGGUuGC- -5'
24485 3' -58.8 NC_005264.1 + 16490 0.67 0.792093
Target:  5'- gUGGCCUgcggGGUCGAGGCacgCCGGCGc -3'
miRNA:   3'- gACCGGGgugaCCAGCUCUG---GGUUGC- -5'
24485 3' -58.8 NC_005264.1 + 94119 0.67 0.783187
Target:  5'- uCUGGCgCCGCUGGUgGAaagGuACCCGcuGCu -3'
miRNA:   3'- -GACCGgGGUGACCAgCU---C-UGGGU--UGc -5'
24485 3' -58.8 NC_005264.1 + 26109 0.67 0.774153
Target:  5'- aCUGGCCaCCGCgcGGcUCGuGGCgCGGCGc -3'
miRNA:   3'- -GACCGG-GGUGa-CC-AGCuCUGgGUUGC- -5'
24485 3' -58.8 NC_005264.1 + 113218 0.67 0.773243
Target:  5'- uUGGCCCC-CUGGUaccccacCGAGcGCCCccCGu -3'
miRNA:   3'- gACCGGGGuGACCA-------GCUC-UGGGuuGC- -5'
24485 3' -58.8 NC_005264.1 + 87634 0.67 0.745421
Target:  5'- -gGGCCgaugcagCCGCgUGGggcgCGGGACCUGGCGg -3'
miRNA:   3'- gaCCGG-------GGUG-ACCa---GCUCUGGGUUGC- -5'
24485 3' -58.8 NC_005264.1 + 95393 0.68 0.7369
Target:  5'- gCUGGCCgCGCUGGUgcaGGGGCUUcagauaGGCGg -3'
miRNA:   3'- -GACCGGgGUGACCAg--CUCUGGG------UUGC- -5'
24485 3' -58.8 NC_005264.1 + 145412 0.68 0.735948
Target:  5'- -gGGCgUCCGCUguccauucauagaGGUCGAGuaACCCGACa -3'
miRNA:   3'- gaCCG-GGGUGA-------------CCAGCUC--UGGGUUGc -5'
24485 3' -58.8 NC_005264.1 + 93861 0.68 0.717721
Target:  5'- aCUGGCCCgcuaaGCUGG-CGAG-CCaGGCGg -3'
miRNA:   3'- -GACCGGGg----UGACCaGCUCuGGgUUGC- -5'
24485 3' -58.8 NC_005264.1 + 146415 0.68 0.708024
Target:  5'- -aGGCCCCGCggcaGUCGAGcgGCCCuuGCc -3'
miRNA:   3'- gaCCGGGGUGac--CAGCUC--UGGGu-UGc -5'
24485 3' -58.8 NC_005264.1 + 47255 0.68 0.688455
Target:  5'- -aGGCCCCACUccuccGGaUCGAuagucagguugGACCUGGCGu -3'
miRNA:   3'- gaCCGGGGUGA-----CC-AGCU-----------CUGGGUUGC- -5'
24485 3' -58.8 NC_005264.1 + 8205 0.69 0.682547
Target:  5'- aCUGGCauuaugccccgcggCCGCUGGUcCGAGuACgCCAGCGc -3'
miRNA:   3'- -GACCGg-------------GGUGACCA-GCUC-UG-GGUUGC- -5'
24485 3' -58.8 NC_005264.1 + 21426 0.69 0.66276
Target:  5'- uUGGCCguaacaggagcuacuCCAgUGGUCGGGGCUC-GCGa -3'
miRNA:   3'- gACCGG---------------GGUgACCAGCUCUGGGuUGC- -5'
24485 3' -58.8 NC_005264.1 + 81003 0.69 0.64885
Target:  5'- gUGGCCuCCGCcuuggUGGUCGA-AgCCAGCGg -3'
miRNA:   3'- gACCGG-GGUG-----ACCAGCUcUgGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.