miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24485 5' -47.2 NC_005264.1 + 127028 0.66 0.999831
Target:  5'- -cCAUUGCGGggCcgGCAGaGGCGCCc -3'
miRNA:   3'- cuGUAACGUUa-GaaUGUUaCCGCGGu -5'
24485 5' -47.2 NC_005264.1 + 8001 0.66 0.999831
Target:  5'- -cCAUUGCGGggCcgGCAGaGGCGCCc -3'
miRNA:   3'- cuGUAACGUUa-GaaUGUUaCCGCGGu -5'
24485 5' -47.2 NC_005264.1 + 93011 0.66 0.999831
Target:  5'- aGCGgggGCAGUCaagGCAGUGGCuagugGCCu -3'
miRNA:   3'- cUGUaa-CGUUAGaa-UGUUACCG-----CGGu -5'
24485 5' -47.2 NC_005264.1 + 29144 0.66 0.999831
Target:  5'- cGCGUggccGCAuagCUUGCAugcaauacUGGCGCCGu -3'
miRNA:   3'- cUGUAa---CGUua-GAAUGUu-------ACCGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 135011 0.66 0.999782
Target:  5'- cGACAguggcGCGAUCUaggcCAAUGGCGUUc -3'
miRNA:   3'- -CUGUaa---CGUUAGAau--GUUACCGCGGu -5'
24485 5' -47.2 NC_005264.1 + 93239 0.66 0.999782
Target:  5'- cGAUcgUGUAAUaccaGCAagcgggcuagGUGGCGCCAg -3'
miRNA:   3'- -CUGuaACGUUAgaa-UGU----------UACCGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 127096 0.66 0.99972
Target:  5'- cGCGgccGCAGUCggGCAcgGGCGgCGu -3'
miRNA:   3'- cUGUaa-CGUUAGaaUGUuaCCGCgGU- -5'
24485 5' -47.2 NC_005264.1 + 8069 0.66 0.99972
Target:  5'- cGCGgccGCAGUCggGCAcgGGCGgCGu -3'
miRNA:   3'- cUGUaa-CGUUAGaaUGUuaCCGCgGU- -5'
24485 5' -47.2 NC_005264.1 + 95327 0.66 0.999644
Target:  5'- gGACGUgucucgcGUGAUCcgagGCAAUGGgGCCGa -3'
miRNA:   3'- -CUGUAa------CGUUAGaa--UGUUACCgCGGU- -5'
24485 5' -47.2 NC_005264.1 + 73906 0.66 0.999644
Target:  5'- aGGCGUgccagGCAccuguUCUUguccuccacgcGCGAUGGCGUCAu -3'
miRNA:   3'- -CUGUAa----CGUu----AGAA-----------UGUUACCGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 131222 0.66 0.99955
Target:  5'- aGGCAUggucGCAGg---GCGAUGcGCGCCGc -3'
miRNA:   3'- -CUGUAa---CGUUagaaUGUUAC-CGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 12195 0.66 0.99955
Target:  5'- aGGCAUggucGCAGg---GCGAUGcGCGCCGc -3'
miRNA:   3'- -CUGUAa---CGUUagaaUGUUAC-CGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 82941 0.66 0.99955
Target:  5'- uACAUUGCGacGUCgccUGCGAcGGuCGCCGc -3'
miRNA:   3'- cUGUAACGU--UAGa--AUGUUaCC-GCGGU- -5'
24485 5' -47.2 NC_005264.1 + 28468 0.67 0.999126
Target:  5'- gGACAcugGCuaAAUC-UGCGAUGGCGCg- -3'
miRNA:   3'- -CUGUaa-CG--UUAGaAUGUUACCGCGgu -5'
24485 5' -47.2 NC_005264.1 + 144660 0.69 0.996072
Target:  5'- gGACuagUGUuuUCgcccccacgACAGUGGCGCCGa -3'
miRNA:   3'- -CUGua-ACGuuAGaa-------UGUUACCGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 52816 0.69 0.995872
Target:  5'- ----cUGCAAUCUcgugaauuggacacuCGGUGGCGCCAc -3'
miRNA:   3'- cuguaACGUUAGAau-------------GUUACCGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 25614 0.69 0.995373
Target:  5'- cGGCGUUGCGGaacaCggcgGCGGUGGgGCCGc -3'
miRNA:   3'- -CUGUAACGUUa---Gaa--UGUUACCgCGGU- -5'
24485 5' -47.2 NC_005264.1 + 86255 0.69 0.994577
Target:  5'- gGACAUUGCGcUCgcuaUUGCAcgGG-GCCAa -3'
miRNA:   3'- -CUGUAACGUuAG----AAUGUuaCCgCGGU- -5'
24485 5' -47.2 NC_005264.1 + 93129 0.69 0.993672
Target:  5'- -----cGCGGUUc-ACGAUGGCGCCAa -3'
miRNA:   3'- cuguaaCGUUAGaaUGUUACCGCGGU- -5'
24485 5' -47.2 NC_005264.1 + 20131 0.7 0.988783
Target:  5'- cGACGaUGCGggCagGCGAUGGCGCg- -3'
miRNA:   3'- -CUGUaACGUuaGaaUGUUACCGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.