miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24486 3' -56.6 NC_005264.1 + 99039 0.66 0.895714
Target:  5'- -uAGCgCAaag-CGggGCCUCCCCCGAg -3'
miRNA:   3'- cuUCGgGUcuaaGUa-CGGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 146618 0.66 0.895714
Target:  5'- gGggGCUCAGAggguagcgCGgcGCgUCCCCCGu -3'
miRNA:   3'- -CuuCGGGUCUaa------GUa-CGgAGGGGGCu -5'
24486 3' -56.6 NC_005264.1 + 63563 0.66 0.895714
Target:  5'- uGAGCUCAGAauaAU-CCUCCCUCGGg -3'
miRNA:   3'- cUUCGGGUCUaagUAcGGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 142720 0.66 0.895057
Target:  5'- -cGGCCCAGAUuuuucccUCGUaUCUUCCCCa- -3'
miRNA:   3'- cuUCGGGUCUA-------AGUAcGGAGGGGGcu -5'
24486 3' -56.6 NC_005264.1 + 147569 0.66 0.893072
Target:  5'- uGAAGCCgUAGAUgcccgaaagcgaGUGCC-CCCUCGAg -3'
miRNA:   3'- -CUUCGG-GUCUAag----------UACGGaGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 38772 0.66 0.882143
Target:  5'- --uGCCagaaGGGUaCGUGCCUCgUCCCGGu -3'
miRNA:   3'- cuuCGGg---UCUAaGUACGGAG-GGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 157798 0.66 0.882143
Target:  5'- --uGCCagaaGGGUaCGUGCCUCgUCCCGGu -3'
miRNA:   3'- cuuCGGg---UCUAaGUACGGAG-GGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 121736 0.66 0.860134
Target:  5'- gGGAGUCCAGAUag--GCCg-CCCCGGc -3'
miRNA:   3'- -CUUCGGGUCUAaguaCGGagGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 103076 0.67 0.852378
Target:  5'- -cAGCCaCGGccaGUUCGUGC--CCCCCGAg -3'
miRNA:   3'- cuUCGG-GUC---UAAGUACGgaGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 132395 0.67 0.827941
Target:  5'- cGAGCCgGGGccCGcGgCUCCCCCGAg -3'
miRNA:   3'- cUUCGGgUCUaaGUaCgGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 13368 0.67 0.827941
Target:  5'- cGAGCCgGGGccCGcGgCUCCCCCGAg -3'
miRNA:   3'- cUUCGGgUCUaaGUaCgGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 24437 0.68 0.810748
Target:  5'- --cGCCCGGAUUgGcuUGCCgaaacagcugCCCUCGAa -3'
miRNA:   3'- cuuCGGGUCUAAgU--ACGGa---------GGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 99672 0.69 0.726367
Target:  5'- cGggGCCCacgcggcaGGGUUCAUGCC-CUCgCCGu -3'
miRNA:   3'- -CuuCGGG--------UCUAAGUACGGaGGG-GGCu -5'
24486 3' -56.6 NC_005264.1 + 12908 0.7 0.676216
Target:  5'- --cGCCCGGccUCGcaguCCUCCCCCGAc -3'
miRNA:   3'- cuuCGGGUCuaAGUac--GGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 131934 0.7 0.676216
Target:  5'- --cGCCCGGccUCGcaguCCUCCCCCGAc -3'
miRNA:   3'- cuuCGGGUCuaAGUac--GGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 17555 0.71 0.614928
Target:  5'- gGAAGCCUAGAccgCG-GCCUCCCCg-- -3'
miRNA:   3'- -CUUCGGGUCUaa-GUaCGGAGGGGgcu -5'
24486 3' -56.6 NC_005264.1 + 83344 0.71 0.614928
Target:  5'- ----aCUAGGUcuUCAgggGCCUCCCCCGAc -3'
miRNA:   3'- cuucgGGUCUA--AGUa--CGGAGGGGGCU- -5'
24486 3' -56.6 NC_005264.1 + 119997 0.72 0.564125
Target:  5'- gGAAGCCCcuGGGgcggCAgguggGCCUCCCCCc- -3'
miRNA:   3'- -CUUCGGG--UCUaa--GUa----CGGAGGGGGcu -5'
24486 3' -56.6 NC_005264.1 + 971 0.73 0.524293
Target:  5'- gGAAGCCCcuGGGgcggCAgguggGCCUCCCCCu- -3'
miRNA:   3'- -CUUCGGG--UCUaa--GUa----CGGAGGGGGcu -5'
24486 3' -56.6 NC_005264.1 + 25007 0.75 0.412621
Target:  5'- -cGGCUCAGGcgcugCAUGCCUCUCCUGAg -3'
miRNA:   3'- cuUCGGGUCUaa---GUACGGAGGGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.