Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24487 | 3' | -55.4 | NC_005264.1 | + | 67383 | 0.66 | 0.938337 |
Target: 5'- cGgcgGCgUCGUCuacgAUGCGCCGCaucuccgggcaaccGCAGAgCa -3' miRNA: 3'- aCa--UG-AGCAG----UACGCGGCG--------------CGUCUgG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 75394 | 0.67 | 0.907345 |
Target: 5'- gGUGCgcgccacCGUC-UGCGCgGCcGCGGGCa -3' miRNA: 3'- aCAUGa------GCAGuACGCGgCG-CGUCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 77311 | 0.66 | 0.943882 |
Target: 5'- aGUGuCUCGUUcaacgcucaguggAUGgacCGgCGUGCAGACCg -3' miRNA: 3'- aCAU-GAGCAG-------------UAC---GCgGCGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 78674 | 0.7 | 0.773486 |
Target: 5'- aGUaaACagGUCcgGCGCgCGCGCugcGACCa -3' miRNA: 3'- aCA--UGagCAGuaCGCG-GCGCGu--CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 79868 | 0.68 | 0.851285 |
Target: 5'- cGUACcuUCGUCAcggggGCGCgGCgGC-GACCg -3' miRNA: 3'- aCAUG--AGCAGUa----CGCGgCG-CGuCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 83396 | 0.66 | 0.939755 |
Target: 5'- --cGCUCGUCGUcugcGCGCCGCG-GGuCg -3' miRNA: 3'- acaUGAGCAGUA----CGCGGCGCgUCuGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 84157 | 0.71 | 0.735283 |
Target: 5'- aGUGgUCG-CA-GCGCgCGCGCcGGACCu -3' miRNA: 3'- aCAUgAGCaGUaCGCG-GCGCG-UCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 85048 | 0.69 | 0.809685 |
Target: 5'- -aUGC-CGUC-UGCGCCGCGguGcgucucugcgGCCg -3' miRNA: 3'- acAUGaGCAGuACGCGGCGCguC----------UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 87432 | 0.67 | 0.907345 |
Target: 5'- cGUACacugCccGCgGCCGCGCAGACg -3' miRNA: 3'- aCAUGagcaGuaCG-CGGCGCGUCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 87601 | 0.67 | 0.894661 |
Target: 5'- cGUGgUCG-CGUuauacaagacgGcCGCCGCGCAGgGCCg -3' miRNA: 3'- aCAUgAGCaGUA-----------C-GCGGCGCGUC-UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 87743 | 0.68 | 0.851285 |
Target: 5'- --aGCUCGgcgCcgGCGCCuGCcGCAGcGCCg -3' miRNA: 3'- acaUGAGCa--GuaCGCGG-CG-CGUC-UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 88531 | 0.69 | 0.800854 |
Target: 5'- --gACUCGUUG-GCcauGCCGCGCgccAGACCg -3' miRNA: 3'- acaUGAGCAGUaCG---CGGCGCG---UCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 89758 | 0.67 | 0.907345 |
Target: 5'- --cACcCGUCGaaguagaGaUGCCGCGCGGGCCa -3' miRNA: 3'- acaUGaGCAGUa------C-GCGGCGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 93160 | 0.68 | 0.843332 |
Target: 5'- aGUcAC-CGUCGggGCGCCGCucCAGACUg -3' miRNA: 3'- aCA-UGaGCAGUa-CGCGGCGc-GUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 95653 | 0.66 | 0.939755 |
Target: 5'- --gGCgccgCGUCAUaGCGCU--GCAGGCCg -3' miRNA: 3'- acaUGa---GCAGUA-CGCGGcgCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 95806 | 0.66 | 0.939755 |
Target: 5'- --cGCUuaCGUCggGgGCCuGCGCAaGGCCg -3' miRNA: 3'- acaUGA--GCAGuaCgCGG-CGCGU-CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 96339 | 0.84 | 0.161114 |
Target: 5'- --aGCUCGUCGagcGCGCCGCGCAGcCCg -3' miRNA: 3'- acaUGAGCAGUa--CGCGGCGCGUCuGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 97417 | 0.67 | 0.910969 |
Target: 5'- gUGUGUUCGgCAgugagcgcugcggGCGCCGCcGCGGAUCu -3' miRNA: 3'- -ACAUGAGCaGUa------------CGCGGCG-CGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 100408 | 0.66 | 0.943882 |
Target: 5'- cGUAUUgGUCGugguUGUGCUGCGaagaagcCGGGCCc -3' miRNA: 3'- aCAUGAgCAGU----ACGCGGCGC-------GUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 101053 | 0.67 | 0.913338 |
Target: 5'- cGUAguaUCGUU-UGUGCaCGCGgGGGCCa -3' miRNA: 3'- aCAUg--AGCAGuACGCG-GCGCgUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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