miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 3' -53.9 NC_005264.1 + 112984 0.66 0.939319
Target:  5'- -aGCAGC--UCCGCCAgaaGGCUGCg- -3'
miRNA:   3'- uaUGUCGcuAGGUGGUac-CCGAUGaa -5'
24488 3' -53.9 NC_005264.1 + 12637 0.66 0.934283
Target:  5'- uAUACcGCGAggCCGCCaAUGuGGCUAUUa -3'
miRNA:   3'- -UAUGuCGCUa-GGUGG-UAC-CCGAUGAa -5'
24488 3' -53.9 NC_005264.1 + 13264 0.66 0.928989
Target:  5'- -aGCAGCcccccUCCGCCcgGGGCUGu-- -3'
miRNA:   3'- uaUGUCGcu---AGGUGGuaCCCGAUgaa -5'
24488 3' -53.9 NC_005264.1 + 104830 0.66 0.928989
Target:  5'- -gACGGCcuGUCCGCCG-GGGCcGCUg -3'
miRNA:   3'- uaUGUCGc-UAGGUGGUaCCCGaUGAa -5'
24488 3' -53.9 NC_005264.1 + 95520 0.66 0.923439
Target:  5'- ---aAGCGGUgCACCAU-GGCUGCa- -3'
miRNA:   3'- uaugUCGCUAgGUGGUAcCCGAUGaa -5'
24488 3' -53.9 NC_005264.1 + 65997 0.67 0.905248
Target:  5'- -aACuGCGccAUCCGCCAUGcGGCUAa-- -3'
miRNA:   3'- uaUGuCGC--UAGGUGGUAC-CCGAUgaa -5'
24488 3' -53.9 NC_005264.1 + 76279 0.68 0.877483
Target:  5'- -gGCAGUcaGAaauUCCACCAUcugggcgcggggGGGCUGCUg -3'
miRNA:   3'- uaUGUCG--CU---AGGUGGUA------------CCCGAUGAa -5'
24488 3' -53.9 NC_005264.1 + 80119 0.68 0.869941
Target:  5'- -cGCuAGCGGUCCGCaagGGGCcGCUg -3'
miRNA:   3'- uaUG-UCGCUAGGUGguaCCCGaUGAa -5'
24488 3' -53.9 NC_005264.1 + 159066 0.69 0.811104
Target:  5'- -gGCGGCGGUCgACCAaGGGCccGCa- -3'
miRNA:   3'- uaUGUCGCUAGgUGGUaCCCGa-UGaa -5'
24488 3' -53.9 NC_005264.1 + 40039 0.69 0.811104
Target:  5'- -gGCGGCGGUCgACCAaGGGCccGCa- -3'
miRNA:   3'- uaUGUCGCUAGgUGGUaCCCGa-UGaa -5'
24488 3' -53.9 NC_005264.1 + 3705 0.7 0.753776
Target:  5'- -gACGGCGAUCgAUCGUGGGaUGCg- -3'
miRNA:   3'- uaUGUCGCUAGgUGGUACCCgAUGaa -5'
24488 3' -53.9 NC_005264.1 + 122732 0.7 0.753776
Target:  5'- -gACGGCGAUCgAUCGUGGGaUGCg- -3'
miRNA:   3'- uaUGUCGCUAGgUGGUACCCgAUGaa -5'
24488 3' -53.9 NC_005264.1 + 44736 1.03 0.008673
Target:  5'- gAUACAGCGAUCCACCAUGGGCUACUUc -3'
miRNA:   3'- -UAUGUCGCUAGGUGGUACCCGAUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.