miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 34631 0.66 0.929809
Target:  5'- ------gGCCCGCGGgGuguUCGcgGCCa -3'
miRNA:   3'- guuuccaCGGGCGCCgCu--AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 146410 0.66 0.929809
Target:  5'- --cGGGcagGcCCCGCGGCaGUCGagcggcccUUGCCu -3'
miRNA:   3'- guuUCCa--C-GGGCGCCGcUAGC--------AACGG- -5'
24488 5' -56 NC_005264.1 + 157229 0.66 0.929809
Target:  5'- -cAAGGUGUUCGCGuGgGucuUCGUggcgGCCc -3'
miRNA:   3'- guUUCCACGGGCGC-CgCu--AGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 5974 0.66 0.924004
Target:  5'- gCAcAGGaaUGCCaguacauuagcagCGCGGCGGUCGcugUGCg -3'
miRNA:   3'- -GUuUCC--ACGG-------------GCGCCGCUAGCa--ACGg -5'
24488 5' -56 NC_005264.1 + 47443 0.66 0.921272
Target:  5'- uUAAGGGUauagaugccaagaccGCCCcUGGgGGUUGUUGUCg -3'
miRNA:   3'- -GUUUCCA---------------CGGGcGCCgCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 122489 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5'
24488 5' -56 NC_005264.1 + 3462 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5'
24488 5' -56 NC_005264.1 + 98049 0.66 0.919044
Target:  5'- ---cGGUGCCCaugggggcgcuGCGcGCaGAUCGUUucgcgGCCa -3'
miRNA:   3'- guuuCCACGGG-----------CGC-CG-CUAGCAA-----CGG- -5'
24488 5' -56 NC_005264.1 + 131660 0.66 0.913309
Target:  5'- ---cGGUGCCCGCcGCcaGAcCGUUGgCg -3'
miRNA:   3'- guuuCCACGGGCGcCG--CUaGCAACgG- -5'
24488 5' -56 NC_005264.1 + 124474 0.66 0.913309
Target:  5'- -cGAGGUGCggaaGCGGCGAgaaaaagCGgcaGCCu -3'
miRNA:   3'- guUUCCACGgg--CGCCGCUa------GCaa-CGG- -5'
24488 5' -56 NC_005264.1 + 103640 0.66 0.913309
Target:  5'- ----uGUGUuuGCGGUucaagGAUCGUUGCa -3'
miRNA:   3'- guuucCACGggCGCCG-----CUAGCAACGg -5'
24488 5' -56 NC_005264.1 + 82627 0.66 0.913309
Target:  5'- gGAGGGgauaUGCgCGUGGCGuuugCGUgGCCc -3'
miRNA:   3'- gUUUCC----ACGgGCGCCGCua--GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 117910 0.66 0.907341
Target:  5'- gCAAcGG-GCCCGCGGU--UCGcUUGCg -3'
miRNA:   3'- -GUUuCCaCGGGCGCCGcuAGC-AACGg -5'
24488 5' -56 NC_005264.1 + 31783 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 150809 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 68994 0.66 0.901142
Target:  5'- --cGGGccagugGCCCGCGGCccugucgccAUCGUacugUGCCa -3'
miRNA:   3'- guuUCCa-----CGGGCGCCGc--------UAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 118039 0.66 0.901142
Target:  5'- uGGAGGUuugCCGCGGCGAccgCGgcGUCg -3'
miRNA:   3'- gUUUCCAcg-GGCGCCGCUa--GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 80372 0.67 0.894058
Target:  5'- ---uGGUGUuuGCGGUGAUgGUucucuuuUGCUc -3'
miRNA:   3'- guuuCCACGggCGCCGCUAgCA-------ACGG- -5'
24488 5' -56 NC_005264.1 + 47545 0.67 0.888059
Target:  5'- gGAAGG-GCUgCGCGG-GAcgUCGUUGUCg -3'
miRNA:   3'- gUUUCCaCGG-GCGCCgCU--AGCAACGG- -5'
24488 5' -56 NC_005264.1 + 83455 0.67 0.888059
Target:  5'- ------cGCCCGCGGCGGuucugaaguaacUCGgUGCUg -3'
miRNA:   3'- guuuccaCGGGCGCCGCU------------AGCaACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.