Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24488 | 5' | -56 | NC_005264.1 | + | 44770 | 1.12 | 0.001973 |
Target: 5'- cCAAAGGUGCCCGCGGCGAUCGUUGCCg -3' miRNA: 3'- -GUUUCCACGGGCGCCGCUAGCAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 33080 | 0.78 | 0.334078 |
Target: 5'- ---cGGUGCCCGgGGCGGauuUCGUgcauaucgUGCCa -3' miRNA: 3'- guuuCCACGGGCgCCGCU---AGCA--------ACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 98431 | 0.76 | 0.39773 |
Target: 5'- ----cGUGCCCGCGGCG-UCGgccuugGCCg -3' miRNA: 3'- guuucCACGGGCGCCGCuAGCaa----CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 3445 | 0.76 | 0.406216 |
Target: 5'- uCAGGGGUccgccGCCCGUGGCGccCGgUGCCg -3' miRNA: 3'- -GUUUCCA-----CGGGCGCCGCuaGCaACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 143862 | 0.74 | 0.506464 |
Target: 5'- gCGGAuGuGUGCCCG-GGCGAUCGUUuCCg -3' miRNA: 3'- -GUUU-C-CACGGGCgCCGCUAGCAAcGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 136315 | 0.73 | 0.565411 |
Target: 5'- aCAGAGGUGUacuugaagcccgCCGCGGCGuagaagcugguUCGgcGCCg -3' miRNA: 3'- -GUUUCCACG------------GGCGCCGCu----------AGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 124155 | 0.73 | 0.59558 |
Target: 5'- gAAAGGUGCUgggcaaCGUGGUGAUgGgcGCCg -3' miRNA: 3'- gUUUCCACGG------GCGCCGCUAgCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 64287 | 0.73 | 0.59558 |
Target: 5'- --cGGGUGCCgaguauCGCGGCccacaGcgCGUUGCCg -3' miRNA: 3'- guuUCCACGG------GCGCCG-----CuaGCAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 58764 | 0.72 | 0.636139 |
Target: 5'- uCAGAGGcGCaCgCGCGGUGGUCGgcGCa -3' miRNA: 3'- -GUUUCCaCG-G-GCGCCGCUAGCaaCGg -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 133675 | 0.71 | 0.706675 |
Target: 5'- cUAGAGGaacgccUGCUCGCcGCGGUCcUUGCCg -3' miRNA: 3'- -GUUUCC------ACGGGCGcCGCUAGcAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 17013 | 0.71 | 0.696715 |
Target: 5'- --cAGGgacgGCaaagGCGGCGAUCGUcGCCa -3' miRNA: 3'- guuUCCa---CGgg--CGCCGCUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 12916 | 0.71 | 0.65643 |
Target: 5'- gCGAuGGUGUgCGUGGCcAUCGUgGCCa -3' miRNA: 3'- -GUUuCCACGgGCGCCGcUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 144427 | 0.71 | 0.66655 |
Target: 5'- gAGAGGgcgcGCCUGCgccggccggaacGGUGGUCGUUGUCc -3' miRNA: 3'- gUUUCCa---CGGGCG------------CCGCUAGCAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 52926 | 0.7 | 0.717558 |
Target: 5'- uCGAGGGgcauugcauggccgcGCCCGCGGCGcAUUGc-GCCg -3' miRNA: 3'- -GUUUCCa--------------CGGGCGCCGC-UAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 102108 | 0.7 | 0.745803 |
Target: 5'- -uGAGGacgGCUgGCGGCGGUaCGagGCCg -3' miRNA: 3'- guUUCCa--CGGgCGCCGCUA-GCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 60413 | 0.7 | 0.764816 |
Target: 5'- --uGGGUGCCCGUGuugcCGGUCGagGCUc -3' miRNA: 3'- guuUCCACGGGCGCc---GCUAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 146824 | 0.7 | 0.726399 |
Target: 5'- aCGGAGG----CGCGGCGGUCGUcgccUGCCa -3' miRNA: 3'- -GUUUCCacggGCGCCGCUAGCA----ACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 140346 | 0.69 | 0.792442 |
Target: 5'- cCAGAGaUGCCCGCaGUGAUgCGauagGCCg -3' miRNA: 3'- -GUUUCcACGGGCGcCGCUA-GCaa--CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 151896 | 0.69 | 0.801377 |
Target: 5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3' miRNA: 3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 42064 | 0.69 | 0.792442 |
Target: 5'- -----uUGCCCGCGGCGcgUGgcGUCa -3' miRNA: 3'- guuuccACGGGCGCCGCuaGCaaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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