miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 44770 1.12 0.001973
Target:  5'- cCAAAGGUGCCCGCGGCGAUCGUUGCCg -3'
miRNA:   3'- -GUUUCCACGGGCGCCGCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 33080 0.78 0.334078
Target:  5'- ---cGGUGCCCGgGGCGGauuUCGUgcauaucgUGCCa -3'
miRNA:   3'- guuuCCACGGGCgCCGCU---AGCA--------ACGG- -5'
24488 5' -56 NC_005264.1 + 98431 0.76 0.39773
Target:  5'- ----cGUGCCCGCGGCG-UCGgccuugGCCg -3'
miRNA:   3'- guuucCACGGGCGCCGCuAGCaa----CGG- -5'
24488 5' -56 NC_005264.1 + 3445 0.76 0.406216
Target:  5'- uCAGGGGUccgccGCCCGUGGCGccCGgUGCCg -3'
miRNA:   3'- -GUUUCCA-----CGGGCGCCGCuaGCaACGG- -5'
24488 5' -56 NC_005264.1 + 143862 0.74 0.506464
Target:  5'- gCGGAuGuGUGCCCG-GGCGAUCGUUuCCg -3'
miRNA:   3'- -GUUU-C-CACGGGCgCCGCUAGCAAcGG- -5'
24488 5' -56 NC_005264.1 + 136315 0.73 0.565411
Target:  5'- aCAGAGGUGUacuugaagcccgCCGCGGCGuagaagcugguUCGgcGCCg -3'
miRNA:   3'- -GUUUCCACG------------GGCGCCGCu----------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 64287 0.73 0.59558
Target:  5'- --cGGGUGCCgaguauCGCGGCccacaGcgCGUUGCCg -3'
miRNA:   3'- guuUCCACGG------GCGCCG-----CuaGCAACGG- -5'
24488 5' -56 NC_005264.1 + 124155 0.73 0.59558
Target:  5'- gAAAGGUGCUgggcaaCGUGGUGAUgGgcGCCg -3'
miRNA:   3'- gUUUCCACGG------GCGCCGCUAgCaaCGG- -5'
24488 5' -56 NC_005264.1 + 58764 0.72 0.636139
Target:  5'- uCAGAGGcGCaCgCGCGGUGGUCGgcGCa -3'
miRNA:   3'- -GUUUCCaCG-G-GCGCCGCUAGCaaCGg -5'
24488 5' -56 NC_005264.1 + 12916 0.71 0.65643
Target:  5'- gCGAuGGUGUgCGUGGCcAUCGUgGCCa -3'
miRNA:   3'- -GUUuCCACGgGCGCCGcUAGCAaCGG- -5'
24488 5' -56 NC_005264.1 + 144427 0.71 0.66655
Target:  5'- gAGAGGgcgcGCCUGCgccggccggaacGGUGGUCGUUGUCc -3'
miRNA:   3'- gUUUCCa---CGGGCG------------CCGCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 17013 0.71 0.696715
Target:  5'- --cAGGgacgGCaaagGCGGCGAUCGUcGCCa -3'
miRNA:   3'- guuUCCa---CGgg--CGCCGCUAGCAaCGG- -5'
24488 5' -56 NC_005264.1 + 133675 0.71 0.706675
Target:  5'- cUAGAGGaacgccUGCUCGCcGCGGUCcUUGCCg -3'
miRNA:   3'- -GUUUCC------ACGGGCGcCGCUAGcAACGG- -5'
24488 5' -56 NC_005264.1 + 52926 0.7 0.717558
Target:  5'- uCGAGGGgcauugcauggccgcGCCCGCGGCGcAUUGc-GCCg -3'
miRNA:   3'- -GUUUCCa--------------CGGGCGCCGC-UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 146824 0.7 0.726399
Target:  5'- aCGGAGG----CGCGGCGGUCGUcgccUGCCa -3'
miRNA:   3'- -GUUUCCacggGCGCCGCUAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 102108 0.7 0.745803
Target:  5'- -uGAGGacgGCUgGCGGCGGUaCGagGCCg -3'
miRNA:   3'- guUUCCa--CGGgCGCCGCUA-GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 60413 0.7 0.764816
Target:  5'- --uGGGUGCCCGUGuugcCGGUCGagGCUc -3'
miRNA:   3'- guuUCCACGGGCGCc---GCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 75217 0.69 0.773224
Target:  5'- gCAGAGGguuUGCCucuggCGCGGCcaGGUCGUccgcguuUGCCg -3'
miRNA:   3'- -GUUUCC---ACGG-----GCGCCG--CUAGCA-------ACGG- -5'
24488 5' -56 NC_005264.1 + 140346 0.69 0.792442
Target:  5'- cCAGAGaUGCCCGCaGUGAUgCGauagGCCg -3'
miRNA:   3'- -GUUUCcACGGGCGcCGCUA-GCaa--CGG- -5'
24488 5' -56 NC_005264.1 + 59987 0.69 0.792442
Target:  5'- ---cGGUGgCCGCGaGCGAgacggccgCGUgGCCg -3'
miRNA:   3'- guuuCCACgGGCGC-CGCUa-------GCAaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.