miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 66178 0.67 0.880482
Target:  5'- cCGGGGGUGCgcuaacgCCGCGcGCGA-CGguuuugaacUUGCCg -3'
miRNA:   3'- -GUUUCCACG-------GGCGC-CGCUaGC---------AACGG- -5'
24488 5' -56 NC_005264.1 + 124007 0.67 0.874087
Target:  5'- ---cGGUGCCCGCG-C-AUCGUcGUCg -3'
miRNA:   3'- guuuCCACGGGCGCcGcUAGCAaCGG- -5'
24488 5' -56 NC_005264.1 + 106519 0.67 0.874087
Target:  5'- ---cGGUGCgCGaCGGCGGcagCGcgGCCg -3'
miRNA:   3'- guuuCCACGgGC-GCCGCUa--GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 15380 0.67 0.869728
Target:  5'- ---cGGUGCCgcaGUGGCGAuagcuugagguugggUCGcgGCCg -3'
miRNA:   3'- guuuCCACGGg--CGCCGCU---------------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 32379 0.68 0.859264
Target:  5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3'
miRNA:   3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5'
24488 5' -56 NC_005264.1 + 151406 0.68 0.859264
Target:  5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3'
miRNA:   3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5'
24488 5' -56 NC_005264.1 + 20230 0.68 0.859264
Target:  5'- -cGAGGUaGCCCggcGUGGCcAUCGUcgcgGCCg -3'
miRNA:   3'- guUUCCA-CGGG---CGCCGcUAGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 93074 0.68 0.856201
Target:  5'- gGGAGG-GgCCGCGGCGAccUCGgcuucucagcucGCCg -3'
miRNA:   3'- gUUUCCaCgGGCGCCGCU--AGCaa----------CGG- -5'
24488 5' -56 NC_005264.1 + 16386 0.68 0.851547
Target:  5'- gAGGGGaUGCCCGUGGCGcAUUG--GCa -3'
miRNA:   3'- gUUUCC-ACGGGCGCCGC-UAGCaaCGg -5'
24488 5' -56 NC_005264.1 + 84648 0.68 0.851547
Target:  5'- ---cGGUGUCCGUaGCGuAUUGUgcgGCCg -3'
miRNA:   3'- guuuCCACGGGCGcCGC-UAGCAa--CGG- -5'
24488 5' -56 NC_005264.1 + 93114 0.68 0.851547
Target:  5'- ---cGGUGCCCGCGcucccGCGGUucacgaUGgcGCCa -3'
miRNA:   3'- guuuCCACGGGCGC-----CGCUA------GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 127333 0.68 0.843634
Target:  5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3'
miRNA:   3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 8306 0.68 0.843634
Target:  5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3'
miRNA:   3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 147357 0.68 0.835532
Target:  5'- --cAGGcccaUGCCCGCcGCGAUCGccGCUu -3'
miRNA:   3'- guuUCC----ACGGGCGcCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 36968 0.68 0.835532
Target:  5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3'
miRNA:   3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 8015 0.68 0.835532
Target:  5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3'
miRNA:   3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 127042 0.68 0.835532
Target:  5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3'
miRNA:   3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 84084 0.68 0.835532
Target:  5'- aAAGGGUGCUCGCGGCuAUUGa---- -3'
miRNA:   3'- gUUUCCACGGGCGCCGcUAGCaacgg -5'
24488 5' -56 NC_005264.1 + 155995 0.68 0.835532
Target:  5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3'
miRNA:   3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 1725 0.68 0.818788
Target:  5'- gGGGGGUGCCCauacuaUGGCGAUCcugGUCg -3'
miRNA:   3'- gUUUCCACGGGc-----GCCGCUAGcaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.