Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24488 | 5' | -56 | NC_005264.1 | + | 1725 | 0.68 | 0.818788 |
Target: 5'- gGGGGGUGCCCauacuaUGGCGAUCcugGUCg -3' miRNA: 3'- gUUUCCACGGGc-----GCCGCUAGcaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 3445 | 0.76 | 0.406216 |
Target: 5'- uCAGGGGUccgccGCCCGUGGCGccCGgUGCCg -3' miRNA: 3'- -GUUUCCA-----CGGGCGCCGCuaGCaACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 3462 | 0.66 | 0.919044 |
Target: 5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3' miRNA: 3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 5974 | 0.66 | 0.924004 |
Target: 5'- gCAcAGGaaUGCCaguacauuagcagCGCGGCGGUCGcugUGCg -3' miRNA: 3'- -GUuUCC--ACGG-------------GCGCCGCUAGCa--ACGg -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 8015 | 0.68 | 0.835532 |
Target: 5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3' miRNA: 3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 8306 | 0.68 | 0.843634 |
Target: 5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3' miRNA: 3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 12916 | 0.71 | 0.65643 |
Target: 5'- gCGAuGGUGUgCGUGGCcAUCGUgGCCa -3' miRNA: 3'- -GUUuCCACGgGCGCCGcUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 15380 | 0.67 | 0.869728 |
Target: 5'- ---cGGUGCCgcaGUGGCGAuagcuugagguugggUCGcgGCCg -3' miRNA: 3'- guuuCCACGGg--CGCCGCU---------------AGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 16386 | 0.68 | 0.851547 |
Target: 5'- gAGGGGaUGCCCGUGGCGcAUUG--GCa -3' miRNA: 3'- gUUUCC-ACGGGCGCCGC-UAGCaaCGg -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 17013 | 0.71 | 0.696715 |
Target: 5'- --cAGGgacgGCaaagGCGGCGAUCGUcGCCa -3' miRNA: 3'- guuUCCa---CGgg--CGCCGCUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 20230 | 0.68 | 0.859264 |
Target: 5'- -cGAGGUaGCCCggcGUGGCcAUCGUcgcgGCCg -3' miRNA: 3'- guUUCCA-CGGG---CGCCGcUAGCAa---CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 31783 | 0.66 | 0.907341 |
Target: 5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3' miRNA: 3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 32379 | 0.68 | 0.859264 |
Target: 5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3' miRNA: 3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 32870 | 0.69 | 0.801377 |
Target: 5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3' miRNA: 3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 33080 | 0.78 | 0.334078 |
Target: 5'- ---cGGUGCCCGgGGCGGauuUCGUgcauaucgUGCCa -3' miRNA: 3'- guuuCCACGGGCgCCGCU---AGCA--------ACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 34631 | 0.66 | 0.929809 |
Target: 5'- ------gGCCCGCGGgGuguUCGcgGCCa -3' miRNA: 3'- guuuccaCGGGCGCCgCu--AGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 36968 | 0.68 | 0.835532 |
Target: 5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3' miRNA: 3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 42064 | 0.69 | 0.792442 |
Target: 5'- -----uUGCCCGCGGCGcgUGgcGUCa -3' miRNA: 3'- guuuccACGGGCGCCGCuaGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 44770 | 1.12 | 0.001973 |
Target: 5'- cCAAAGGUGCCCGCGGCGAUCGUUGCCg -3' miRNA: 3'- -GUUUCCACGGGCGCCGCUAGCAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 47443 | 0.66 | 0.921272 |
Target: 5'- uUAAGGGUauagaugccaagaccGCCCcUGGgGGUUGUUGUCg -3' miRNA: 3'- -GUUUCCA---------------CGGGcGCCgCUAGCAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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