miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 47545 0.67 0.888059
Target:  5'- gGAAGG-GCUgCGCGG-GAcgUCGUUGUCg -3'
miRNA:   3'- gUUUCCaCGG-GCGCCgCU--AGCAACGG- -5'
24488 5' -56 NC_005264.1 + 52926 0.7 0.717558
Target:  5'- uCGAGGGgcauugcauggccgcGCCCGCGGCGcAUUGc-GCCg -3'
miRNA:   3'- -GUUUCCa--------------CGGGCGCCGC-UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 58764 0.72 0.636139
Target:  5'- uCAGAGGcGCaCgCGCGGUGGUCGgcGCa -3'
miRNA:   3'- -GUUUCCaCG-G-GCGCCGCUAGCaaCGg -5'
24488 5' -56 NC_005264.1 + 59987 0.69 0.792442
Target:  5'- ---cGGUGgCCGCGaGCGAgacggccgCGUgGCCg -3'
miRNA:   3'- guuuCCACgGGCGC-CGCUa-------GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 60413 0.7 0.764816
Target:  5'- --uGGGUGCCCGUGuugcCGGUCGagGCUc -3'
miRNA:   3'- guuUCCACGGGCGCc---GCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 64287 0.73 0.59558
Target:  5'- --cGGGUGCCgaguauCGCGGCccacaGcgCGUUGCCg -3'
miRNA:   3'- guuUCCACGG------GCGCCG-----CuaGCAACGG- -5'
24488 5' -56 NC_005264.1 + 66178 0.67 0.880482
Target:  5'- cCGGGGGUGCgcuaacgCCGCGcGCGA-CGguuuugaacUUGCCg -3'
miRNA:   3'- -GUUUCCACG-------GGCGC-CGCUaGC---------AACGG- -5'
24488 5' -56 NC_005264.1 + 68994 0.66 0.901142
Target:  5'- --cGGGccagugGCCCGCGGCccugucgccAUCGUacugUGCCa -3'
miRNA:   3'- guuUCCa-----CGGGCGCCGc--------UAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 75217 0.69 0.773224
Target:  5'- gCAGAGGguuUGCCucuggCGCGGCcaGGUCGUccgcguuUGCCg -3'
miRNA:   3'- -GUUUCC---ACGG-----GCGCCG--CUAGCA-------ACGG- -5'
24488 5' -56 NC_005264.1 + 80372 0.67 0.894058
Target:  5'- ---uGGUGUuuGCGGUGAUgGUucucuuuUGCUc -3'
miRNA:   3'- guuuCCACGggCGCCGCUAgCA-------ACGG- -5'
24488 5' -56 NC_005264.1 + 82627 0.66 0.913309
Target:  5'- gGAGGGgauaUGCgCGUGGCGuuugCGUgGCCc -3'
miRNA:   3'- gUUUCC----ACGgGCGCCGCua--GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 83455 0.67 0.888059
Target:  5'- ------cGCCCGCGGCGGuucugaaguaacUCGgUGCUg -3'
miRNA:   3'- guuuccaCGGGCGCCGCU------------AGCaACGG- -5'
24488 5' -56 NC_005264.1 + 84084 0.68 0.835532
Target:  5'- aAAGGGUGCUCGCGGCuAUUGa---- -3'
miRNA:   3'- gUUUCCACGGGCGCCGcUAGCaacgg -5'
24488 5' -56 NC_005264.1 + 84648 0.68 0.851547
Target:  5'- ---cGGUGUCCGUaGCGuAUUGUgcgGCCg -3'
miRNA:   3'- guuuCCACGGGCGcCGC-UAGCAa--CGG- -5'
24488 5' -56 NC_005264.1 + 93074 0.68 0.856201
Target:  5'- gGGAGG-GgCCGCGGCGAccUCGgcuucucagcucGCCg -3'
miRNA:   3'- gUUUCCaCgGGCGCCGCU--AGCaa----------CGG- -5'
24488 5' -56 NC_005264.1 + 93114 0.68 0.851547
Target:  5'- ---cGGUGCCCGCGcucccGCGGUucacgaUGgcGCCa -3'
miRNA:   3'- guuuCCACGGGCGC-----CGCUA------GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 98049 0.66 0.919044
Target:  5'- ---cGGUGCCCaugggggcgcuGCGcGCaGAUCGUUucgcgGCCa -3'
miRNA:   3'- guuuCCACGGG-----------CGC-CG-CUAGCAA-----CGG- -5'
24488 5' -56 NC_005264.1 + 98431 0.76 0.39773
Target:  5'- ----cGUGCCCGCGGCG-UCGgccuugGCCg -3'
miRNA:   3'- guuucCACGGGCGCCGCuAGCaa----CGG- -5'
24488 5' -56 NC_005264.1 + 102108 0.7 0.745803
Target:  5'- -uGAGGacgGCUgGCGGCGGUaCGagGCCg -3'
miRNA:   3'- guUUCCa--CGGgCGCCGCUA-GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 103640 0.66 0.913309
Target:  5'- ----uGUGUuuGCGGUucaagGAUCGUUGCa -3'
miRNA:   3'- guuucCACGggCGCCG-----CUAGCAACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.