miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 157229 0.66 0.929809
Target:  5'- -cAAGGUGUUCGCGuGgGucuUCGUggcgGCCc -3'
miRNA:   3'- guUUCCACGGGCGC-CgCu--AGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 155995 0.68 0.835532
Target:  5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3'
miRNA:   3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 151896 0.69 0.801377
Target:  5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3'
miRNA:   3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5'
24488 5' -56 NC_005264.1 + 151406 0.68 0.859264
Target:  5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3'
miRNA:   3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5'
24488 5' -56 NC_005264.1 + 150809 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 147357 0.68 0.835532
Target:  5'- --cAGGcccaUGCCCGCcGCGAUCGccGCUu -3'
miRNA:   3'- guuUCC----ACGGGCGcCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 146824 0.7 0.726399
Target:  5'- aCGGAGG----CGCGGCGGUCGUcgccUGCCa -3'
miRNA:   3'- -GUUUCCacggGCGCCGCUAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 146410 0.66 0.929809
Target:  5'- --cGGGcagGcCCCGCGGCaGUCGagcggcccUUGCCu -3'
miRNA:   3'- guuUCCa--C-GGGCGCCGcUAGC--------AACGG- -5'
24488 5' -56 NC_005264.1 + 144427 0.71 0.66655
Target:  5'- gAGAGGgcgcGCCUGCgccggccggaacGGUGGUCGUUGUCc -3'
miRNA:   3'- gUUUCCa---CGGGCG------------CCGCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 143862 0.74 0.506464
Target:  5'- gCGGAuGuGUGCCCG-GGCGAUCGUUuCCg -3'
miRNA:   3'- -GUUU-C-CACGGGCgCCGCUAGCAAcGG- -5'
24488 5' -56 NC_005264.1 + 140346 0.69 0.792442
Target:  5'- cCAGAGaUGCCCGCaGUGAUgCGauagGCCg -3'
miRNA:   3'- -GUUUCcACGGGCGcCGCUA-GCaa--CGG- -5'
24488 5' -56 NC_005264.1 + 136315 0.73 0.565411
Target:  5'- aCAGAGGUGUacuugaagcccgCCGCGGCGuagaagcugguUCGgcGCCg -3'
miRNA:   3'- -GUUUCCACG------------GGCGCCGCu----------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 133675 0.71 0.706675
Target:  5'- cUAGAGGaacgccUGCUCGCcGCGGUCcUUGCCg -3'
miRNA:   3'- -GUUUCC------ACGGGCGcCGCUAGcAACGG- -5'
24488 5' -56 NC_005264.1 + 131660 0.66 0.913309
Target:  5'- ---cGGUGCCCGCcGCcaGAcCGUUGgCg -3'
miRNA:   3'- guuuCCACGGGCGcCG--CUaGCAACgG- -5'
24488 5' -56 NC_005264.1 + 127333 0.68 0.843634
Target:  5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3'
miRNA:   3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 127042 0.68 0.835532
Target:  5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3'
miRNA:   3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 124474 0.66 0.913309
Target:  5'- -cGAGGUGCggaaGCGGCGAgaaaaagCGgcaGCCu -3'
miRNA:   3'- guUUCCACGgg--CGCCGCUa------GCaa-CGG- -5'
24488 5' -56 NC_005264.1 + 124155 0.73 0.59558
Target:  5'- gAAAGGUGCUgggcaaCGUGGUGAUgGgcGCCg -3'
miRNA:   3'- gUUUCCACGG------GCGCCGCUAgCaaCGG- -5'
24488 5' -56 NC_005264.1 + 124007 0.67 0.874087
Target:  5'- ---cGGUGCCCGCG-C-AUCGUcGUCg -3'
miRNA:   3'- guuuCCACGGGCGCcGcUAGCAaCGG- -5'
24488 5' -56 NC_005264.1 + 122489 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.