Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24488 | 5' | -56 | NC_005264.1 | + | 124007 | 0.67 | 0.874087 |
Target: 5'- ---cGGUGCCCGCG-C-AUCGUcGUCg -3' miRNA: 3'- guuuCCACGGGCGCcGcUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 127042 | 0.68 | 0.835532 |
Target: 5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3' miRNA: 3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 84084 | 0.68 | 0.835532 |
Target: 5'- aAAGGGUGCUCGCGGCuAUUGa---- -3' miRNA: 3'- gUUUCCACGGGCGCCGcUAGCaacgg -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 155995 | 0.68 | 0.835532 |
Target: 5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3' miRNA: 3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 127333 | 0.68 | 0.843634 |
Target: 5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3' miRNA: 3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 16386 | 0.68 | 0.851547 |
Target: 5'- gAGGGGaUGCCCGUGGCGcAUUG--GCa -3' miRNA: 3'- gUUUCC-ACGGGCGCCGC-UAGCaaCGg -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 84648 | 0.68 | 0.851547 |
Target: 5'- ---cGGUGUCCGUaGCGuAUUGUgcgGCCg -3' miRNA: 3'- guuuCCACGGGCGcCGC-UAGCAa--CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 93074 | 0.68 | 0.856201 |
Target: 5'- gGGAGG-GgCCGCGGCGAccUCGgcuucucagcucGCCg -3' miRNA: 3'- gUUUCCaCgGGCGCCGCU--AGCaa----------CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 151406 | 0.68 | 0.859264 |
Target: 5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3' miRNA: 3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 1725 | 0.68 | 0.818788 |
Target: 5'- gGGGGGUGCCCauacuaUGGCGAUCcugGUCg -3' miRNA: 3'- gUUUCCACGGGc-----GCCGCUAGcaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 151896 | 0.69 | 0.801377 |
Target: 5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3' miRNA: 3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 59987 | 0.69 | 0.792442 |
Target: 5'- ---cGGUGgCCGCGaGCGAgacggccgCGUgGCCg -3' miRNA: 3'- guuuCCACgGGCGC-CGCUa-------GCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 3445 | 0.76 | 0.406216 |
Target: 5'- uCAGGGGUccgccGCCCGUGGCGccCGgUGCCg -3' miRNA: 3'- -GUUUCCA-----CGGGCGCCGCuaGCaACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 64287 | 0.73 | 0.59558 |
Target: 5'- --cGGGUGCCgaguauCGCGGCccacaGcgCGUUGCCg -3' miRNA: 3'- guuUCCACGG------GCGCCG-----CuaGCAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 58764 | 0.72 | 0.636139 |
Target: 5'- uCAGAGGcGCaCgCGCGGUGGUCGgcGCa -3' miRNA: 3'- -GUUUCCaCG-G-GCGCCGCUAGCaaCGg -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 12916 | 0.71 | 0.65643 |
Target: 5'- gCGAuGGUGUgCGUGGCcAUCGUgGCCa -3' miRNA: 3'- -GUUuCCACGgGCGCCGcUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 17013 | 0.71 | 0.696715 |
Target: 5'- --cAGGgacgGCaaagGCGGCGAUCGUcGCCa -3' miRNA: 3'- guuUCCa---CGgg--CGCCGCUAGCAaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 133675 | 0.71 | 0.706675 |
Target: 5'- cUAGAGGaacgccUGCUCGCcGCGGUCcUUGCCg -3' miRNA: 3'- -GUUUCC------ACGGGCGcCGCUAGcAACGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 52926 | 0.7 | 0.717558 |
Target: 5'- uCGAGGGgcauugcauggccgcGCCCGCGGCGcAUUGc-GCCg -3' miRNA: 3'- -GUUUCCa--------------CGGGCGCCGC-UAGCaaCGG- -5' |
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24488 | 5' | -56 | NC_005264.1 | + | 42064 | 0.69 | 0.792442 |
Target: 5'- -----uUGCCCGCGGCGcgUGgcGUCa -3' miRNA: 3'- guuuccACGGGCGCCGCuaGCaaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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